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Result Summary

Number of genes 22
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Probe LP07668 Links: Permalink

Genes: CG10479

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 5
   Yolk nuclei
    Subset yolk nuclei
     Random yolk nuclei
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
     Posterior blastoderm nuclei
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around yolk nuclei
    Exclusionary patterns
     Pole cell exclusion
    Apical localization
     Apical enrichment
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Yolk Nuclei
    Subset yolk nuclei
     Random yolk nuclei
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
     Expression in mesoderm
     Expression in ectoderm
  Medium expression (21-40ms exp)
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around yolk nuclei
    Exclusionary patterns
    Cell junction associated
    Apical localization
     Apical enrichment
   Embryonic localization patterns
    Ventral localization
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Yolk nuclei
    Subset yolk nuclei
     Random yolk nuclei
   Blastoderm nuclei
    Subset blastoderm nuclei
     Ventral blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
     Expression in mesoderm
     Anterior blastoderm nuclei
  Medium expression (21-40ms exp)
  Localized
   Subcellular localization patterns
    Apical localization
     Apical enrichment
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Yolk nuclei
    Inside Yolk nuclei
   Tracheal system
    Specific tracheal branches
   Segmented pattern
   Salivary glands
    Salivary glands lumen
   Muscles-embryo
   Midgut
    Midgut ICPs
   CNS
    Ventral nerve cord
   Blastoderm nuclei
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Accumulation nuclear subregion
    Foci
     Small Foci
      Small Foci in tracheal cells

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Salivary glands, probably non-specific.
Good probe Low maternal.

Probe LD36410 Links: Permalink

Genes: CG11798

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 4
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Gap-gene pattern
     Central band of nuclei
  Maternal
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
    Cell division apparatus
     Other cell division pattern
 Degraded
  Degraded partially stage 5
  Degraded partially stage 4
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
      Gap-gene pattern
     Central band of nuclei
  Localized
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Basal localization
     Basal enrichment
   Embryonic localization patterns
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
     Expression in mesoderm

Larva

Area Images Terms
fat body 3rd Instar Larval Tissues
 Fat body
  Not expressed in fat body
intestine 3rd Instar Larval Tissues
 Intestine
  Not expressed in the intestine
imaginal discs 3rd Instar Larval Tissues
 Imaginal discs
  Not expressed in imaginal discs
nervous system 3rd Instar Larval Tissues
 Nervous system
  Not expressed in nervous system
salivary gland 3rd Instar Larval Tissues
 Salivary gland
  Not expressed in salivary glands
lymph glands and ring glands 3rd Instar Larval Tissues
 Lymph Glands and Ring Glands
  Ring gland
   Not expressed in ring gland
   Borderline between 'not expressed' and 'low expression'
  Lymph Glands
   Not expressed in lymph glands

Adult

Area Images Terms

Comments

Need more images to get the full story.
No images (?). Re-annotated

Probe GH08635 Links: Permalink

Genes: CG31275

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Non-Expressed
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 4
   Blastoderm nuclei
    Subset blastoderm nuclei
     Single stripe
     Segmented pattern
      Segment polarity pattern
      Gap-gene pattern
  Weak expression (>41ms exp)
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Single stripe
     Segmented pattern
      Segment polarity pattern
      Gap-gene pattern
  Weak expression (>41ms exp)
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Single stripe
     Segmented pattern
      Segment polarity pattern
      Gap-gene pattern
  Weak expression (>41ms exp)
stage 10-17 Stage 10-17
 Non-Expressed

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Good probe on gel.
Only one stripe of zygotic expression at the posterior half of the embryo.
Only one stripe of zygotic expression at the posterior half of the embryo.
Only a few cells. Intersting.

Probe RE27439 Links: Permalink

Genes: CG6634

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Pair-rule pattern
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Yolk cortex exclusion
     Pole cell exclusion
     Apical exclusion
 Degraded
  Degraded partially stage 5
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
      Pair-rule pattern
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Intranuclear accumulation
      Accumulation nuclear subregion
    Apical localization
     Apical enrichment
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
    Basal localization
     Basal enrichment
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Segmented pattern
   Posterior spiracles
   Ectoderm
   Dorsal vessel
    Dorsal vessel specific pattern
   CNS
    Ventral nerve cord
   Brain
   Atrium
  Localized
   Subcellular localization patterns
    Foci
     Small Foci
      Small Foci in other tissues
      Small Foci in head
      Small Foci in ectoderm
    Apical enrichment
     Apical in other tissues

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Low probe on gel.
Nice patterns!

Probe RE23942 Links: Permalink

Genes: CG7884

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
   Embryonic localization patterns
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 5
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
      Gap-gene pattern
     Random blastoderm nuclei
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Pole cell exclusion
    Cytoplasmic foci
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
      Gap-gene pattern
     Random blastoderm nuclei
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Tracheal system
    Tracheal lumen
    Specific tracheal branches
     Dorsal trunk
   Posterior spiracles
   Hindgut
    Specific hindgut area or cells
   Head
   Ectoderm
   Blastoderm nuclei
  Localized
   Subcellular localization patterns
    Foci
     Small Foci
      Small Foci in tracheal cells

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Low probe on gel.

Probe GM07940 Links: Permalink

Genes: CG9924

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Ubiquitous
  Strong expression (1-20ms exp)
  Maternal
 Degraded
  Degraded partially stage 3
  Degradation maternal transcripts
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 4
   Blastoderm nuclei
    Subset blastoderm nuclei
     Anterior blastoderm nuclei
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Posterior localization
    Pole cell localization
     Pole cell enrichment
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around pole cell nuclei
    Cytoplasmic foci
   Embryonic localization patterns
 Degraded
  Degraded partially stage 5
  Degraded partially stage 4
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
     Anterior blastoderm nuclei
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
   Pole cell localization
    Pole cell enrichment
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
     Expression in neuroblasts
     Expression in mesoderm
     Anterior blastoderm nuclei
  Medium expression (21-40ms exp)
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
    Cell junction associated
   Germ cell localization
    Germ cell enrichment
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Segmented pattern
   Neuroblasts
   Head
    Head epidermis
   Ectoderm
   Blastoderm nuclei
  Localized
   Subcellular localization patterns
    Foci
     Small Foci
      Small Foci in ectoderm

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Need more images to get the full story. In situ done in 2006, before we started screening late stage embryos.
Re-annotated

Probe RE02264 Links: Permalink

Genes: ECSIT

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 5
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
      Pair-rule pattern
      Gap-gene pattern
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Pole cell exclusion
    Apical localization
     Apical enrichment
      Apical clusters
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Zygotic starting stage 6
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Intranuclear accumulation
      Accumulation nuclear subregion
      Accumulation in subset nuclei
    Apical localization
     Apical enrichment
      Apical clusters
   Embryonic localization patterns
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
  Weak expression (>41ms exp)
  Localized
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Proventriculus
   Hindgut
    Specific hindgut area or cells
   Germ cell nuclei
    Gonads
   Ectoderm
   Blastoderm nuclei
  Localized

Larva

Area Images Terms
fat body 3rd Instar Larval Tissues
 Fat body
  Subcellular Localization - Fat body
   Cytoplasmic foci-fat body
  Expressed in fat body
   Fat body allover - Ubiquitous
intestine 3rd Instar Larval Tissues
 Intestine
  Expressed in proventriculus
   Proventriculus allover
  Expressed in pharynx
   Pharynx particular pattern
  Expressed in malpighian tubules
   Subcellular localization in malpighian tubules
    Malpighian tubules - foci
   Malpighian tubules allover
  Expressed in gastric caeca
   Gastric caeca allover
imaginal discs 3rd Instar Larval Tissues
 Imaginal discs
  Expressed in wing disc
   Wing disc pouch
   Wing disc few cells - dots
   Wing disc allover
   Basal wing disc localization
  Expressed in leg discs
   Leg discs few cells - dots
  Expressed in eye disc
   Morphogenetic furrow
   Eye disc photo-receptors
   Eye disc few cells - dots
   Eye disc basal
   Eye disc apical
   Eye disc allover
   Eye disc - center round cells
   Expressed in antennal disc
    Antennal disc few cells - dots
nervous system 3rd Instar Larval Tissues
 Nervous system
  Expressed in ventral nerve cord
   Ventral nerve cord - foci or 'dots'
  Borderline between 'not expressed' and 'low expression'
salivary gland 3rd Instar Larval Tissues
 Salivary gland
  Expressed in salivary glands
   Salivary glands allover
  Borderline between 'not expressed' and 'low expression'
muscles 3rd Instar Larval Tissues
 Larval Muscles - larva
  Expressed in larval muscles-Larva
   Sub-cellular localization in muscles-Larva
    Larval Muscles - Cytoplasmic foci
lymph glands and ring glands 3rd Instar Larval Tissues
 Lymph Glands and Ring Glands
  Ring gland
   Ring gland - Subcellular localization
    Ring gland - Cytoplasmic foci
   Expressed in ring gland
    Ring gland allover
  Lymph Glands
   Subcellular localization in lymph glands
    Lymph Glands - Cytoplasmic foci
   Expressed in lymph glands
    Lymph glands all over

Adult

Area Images Terms

Comments

The wingless probe is on the next row of the same plate... Potential cross-contamination.
Good probe on gel.

Probe SD07045 Links: Permalink

Genes: Imp

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Posterior localization
     Pole plasm
   Embryonic localization patterns
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 5
   Yolk nuclei
    All yolk nuclei
   Blastoderm nuclei
    All blastoderm nuclei
     Transiently widespread
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Posterior localization
    Pole cell localization
     Pole cell enrichment
    Other subcellular pattern
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around pole cell nuclei
    Exclusionary patterns
     Apical exclusion
    Cytoplasmic foci
   Embryonic localization patterns
 Degraded
  Degraded partially stage 5
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Yolk Nuclei
    Subset yolk nuclei
     Random yolk nuclei
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
      Gap-gene pattern
     Random blastoderm nuclei
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Other subcellular pattern
    Cytoplasmic foci
   Posterior localization
   Pole cell localization
    Pole cell enrichment
   Embryonic localization patterns
stage 8-9 Stage 8-9
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
 Degraded
  Degraded partially stage 8
  Degradation zygotic transcripts
  Degradation maternal transcripts

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Re-annotated.
Clear Foci around pole cell nuclei.

Probe GH03311 Links: Permalink

Genes: Letm1

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 4
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
      Gap-gene pattern
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
      Gap-gene pattern
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Apical localization
     Apical enrichment
   Embryonic localization patterns
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
     Expression in neuroblasts
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
    Apical localization
     Apical enrichment
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Tracheal system
    Tracheal lumen
   Midgut
   Ectoderm
   CNS
   Brain
   Amnioserosa

Larva

Area Images Terms
fat body 3rd Instar Larval Tissues
 Fat body
  Not expressed in fat body
intestine 3rd Instar Larval Tissues
 Intestine
  Expressed in midgut
   Subcellular localization in midgut
    Midgut - foci
   Midgut allover
  Expressed in malpighian tubules
   Subcellular localization in malpighian tubules
    Malpighian tubules - foci
   Malpighian tubules allover
  Expressed in gastric caeca
   Gastric caeca allover
imaginal discs 3rd Instar Larval Tissues
 Imaginal discs
  Expressed in leg discs
   Leg discs few cells - dots
   Leg discs allover
  Expressed in eye disc
   Eye disc few cells - dots
nervous system 3rd Instar Larval Tissues
 Nervous system
  Expressed in ventral nerve cord
   Ventral nerve cord - foci or 'dots'
   Localized to axons
  Expressed in brain lobes
   Brain lobes - Foci or dots
salivary gland 3rd Instar Larval Tissues
 Salivary gland
  Subcellular localization in salivary gland
   Salivary gland - Perinuclear
   Salivary gland - Cytoplasmic foci
  Nascent transcript in salivary gland
  Expressed in salivary glands
lymph glands and ring glands 3rd Instar Larval Tissues
 Lymph Glands and Ring Glands
  Ring gland
   Ring gland - Subcellular localization
    Ring gland - Cytoplasmic foci
     Ring gland - Few and small foci
   Expressed in ring gland
    Ring gland allover

Adult

Area Images Terms

Comments

Good probe, a bit low.
It is hard to distinguish if the axons in the larval ventral nerve cord are 'axons' or 'tracheal extensions'

Probe HL01913 Links: Permalink

Genes: RhoGEF3

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 4
   Blastoderm nuclei
    Subset blastoderm nuclei
     Ventral blastoderm nuclei
     Segmented pattern
      Gap-gene pattern
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Pole cell exclusion
 Degraded
  Degraded partially stage 5
  Degraded partially stage 4
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
      Gap-gene pattern
  Localized
   Subcellular localization patterns
    Exclusionary patterns
    Basal localization
     Basal enrichment
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Ventral blastoderm nuclei
     Expression in neuroblasts
     Expression in ectoderm
  Localized
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Midgut
   Hindgut
   Head
   Ectoderm
   CNS
    Ventral nerve cord
   Brain
   Blastoderm nuclei

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Probe HL02012 Links: Permalink

Genes: ap

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Ventral blastoderm nuclei
     Posterior blastoderm nuclei
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Pole cell exclusion
 Degraded
  Degraded partially stage 5
  Degraded partially stage 4
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Ventral blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
     Expression in mesoderm
  Weak expression (>41ms exp)
  Localized
   Local terms for zygotic transcripts
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Ventral blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
     Expression in neuroblasts
     Expression in mesoderm
  Localized
   Local terms for zygotic transcripts
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Tracheal system
   Sensory system
   Posterior spiracles
   PNS
   Head
   CNS
    Ventral nerve cord
   Brain
   Blastoderm nuclei

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Dynamic and specific expression.
Dynamic and specific expression.
Dynamic and specific expression.
Dynamic and specific expression.
Low maternal.

Probe eve-RA Links: Permalink

Genes: eve

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Non-Expressed
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Pair-rule pattern
  Localized
   Subcellular localization patterns
 Degraded
  Degraded partially stage 5
  Degraded partially stage 4
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
 Degraded
  Degraded partially stage 7
  Degraded partially stage 6
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Expression in ectoderm
     Dorsal blastoderm nuclei
  Localized
   Embryonic localization patterns
 Degraded
  Degraded partially stage 8
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Dorsal vessel
    Dorsal vessel specific pattern
   CNS
    Ventral nerve cord
     Foci - VNC
   Anal pad
    Ring around anal pad
  Localized
   Subcellular localization patterns
    Foci
     Small Foci
      Small Foci in dorsal vessel

Larva

Area Images Terms

Adult

Area Images Terms

Comments

-probes were designed against eve-RA isoform transcript
-tested using HCR-FISH probes (3 probe sets)
-very neat stripe patterns

Probe hh-RB Links: Permalink

Genes: hh

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Non-Expressed
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 4
   Blastoderm nuclei
    Subset blastoderm nuclei
     Single stripe
     Segmented pattern
      Segment polarity pattern
     Posterior blastoderm nuclei
     Dorsal blastoderm nuclei
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Intranuclear accumulation
      Accumulation in subset nuclei
    Exclusionary patterns
     Yolk plasm exclusion
    Cytoplasmic foci
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
     Expression in ectoderm
     Expression in API
     Anterior blastoderm nuclei
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Intranuclear accumulation
      Accumulation in subset nuclei
    Cytoplasmic foci
    Basal localization
     Basal enrichment
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
     Expression in mesoderm
     Expression in ectoderm
     Anterior blastoderm nuclei
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Accumulation nuclear subregion
     Accumulation in subset nuclei
   Embryonic localization patterns
    Germ band localization
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Proventriculus
   Pharynx
   Hindgut
    Specific hindgut area or cells
   Head
    Head epidermis
   Esophagus
   Ectoderm
   Clypeo-labral bud
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Nuclear in proventriculus
     Nuclear in pharynx
     Nuclear in ectoderm
    Foci
     Small Foci
      Small foci in Proventriculus
      Small Foci in Pharynx
      Small Foci in hindgut
      Small Foci in ectoderm

Larva

Area Images Terms

Adult

Area Images Terms

Comments

-performed via HCR-FISH using 3 probe sets targeting the RB isoform transcript

Probe AT24588 Links: Permalink

Genes: inv

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Non-Expressed
 Degraded
  Degraded completely stage 4
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Zygotic starting stage 7
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
stage 10-17 Stage 10-17
 Expressed

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Salivary glands, ectoderm. Segment polarity stripes.
Nice stripes!

Probe RE48009 Links: Permalink

Genes: odd

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Maternal
  Localized
   Embryonic localization patterns
    Exclusionary patterns
     Pole plasm excluded
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 4
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Pair-rule pattern
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Pole cell exclusion
    Cell division apparatus
     Spindle midzone localization
     Chromatin associated metaphase
    Apical localization
     Apical enrichment
      Diffuse apical localization
   Local terms for zygotic transcripts
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
  Localized
   Subcellular localization patterns
    Apical localization
     Apical enrichment
      Diffuse apical localization
   Local terms for zygotic transcripts
   Embryonic localization patterns
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
  Localized
   Subcellular localization patterns
    Apical localization
     Apical enrichment
      Apical Localization Neuroblasts
   Local terms for zygotic transcripts
   Embryonic localization patterns
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Segmented pattern
   Ectoderm
  Localized
   Subcellular localization patterns
    Apical enrichment
     Apical ectoderm

Larva

Area Images Terms
fat body 3rd Instar Larval Tissues
 Fat body
  Subcellular Localization - Fat body
   Cytoplasmic foci-fat body
  Expressed in fat body
   Fat body allover - Ubiquitous
intestine 3rd Instar Larval Tissues
 Intestine
  Expressed in gastric caeca
   Subcellular localization in gastric caeca
    Gastric caeca foci
   Gastric caeca allover
imaginal discs 3rd Instar Larval Tissues
 Imaginal discs
  Expressed in leg discs
   Leg discs particular pattern
   Leg discs few cells - dots
  Expressed in eye disc
   Morphogenetic furrow
   Eye disc few cells - dots
nervous system 3rd Instar Larval Tissues
 Nervous system
salivary gland 3rd Instar Larval Tissues
 Salivary gland
  Not expressed in salivary glands
  Borderline between 'not expressed' and 'low expression'
muscles 3rd Instar Larval Tissues
 Larval Muscles - larva
  Expressed in larval muscles-Larva
   Sub-cellular localization in muscles-Larva
    Larval Muscles - Cytoplasmic foci
   Muscles allover - Larva
lymph glands and ring glands 3rd Instar Larval Tissues
 Lymph Glands and Ring Glands
  Ring gland
   Ring gland - Subcellular localization
    Ring gland - Cytoplasmic foci
     Ring gland - Few and small foci
   Expressed in ring gland
    Ring gland allover

Adult

Area Images Terms

Comments

It is hard to distinguish if the axons in the larval ventral nerve cord are 'axons' or 'tracheal extensions.
-missing late stage expression; candidate for retesting (2025)

Probe GH03557 Links: Permalink

Genes: phl

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Ubiquitous
  Medium expression (21-40ms exp)
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 5
   Yolk nuclei
    Subset yolk nuclei
     Random yolk nuclei
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
      Gap-gene pattern
  Ubiquitous
  Maternal
 Degraded
  Degraded partially stage 5
  Degraded partially stage 4
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Yolk Nuclei
    Subset yolk nuclei
     Random yolk nuclei
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
      Gap-gene pattern
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Zygotic
  Ubiquitous
  Localized
   Local terms for zygotic transcripts

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Probe GH22686 Links: Permalink

Genes: prd

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Non-Expressed
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 4
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Pair-rule pattern
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
    Apical localization
     Apical enrichment
      Diffuse apical localization
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
  Localized
   Subcellular localization patterns
    Apical localization
     Apical enrichment
      Diffuse apical localization
   Embryonic localization patterns

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Zygotic RNA exhibits diffuse apical localization. During nuclear divisions, the RNA localizes in cytoplasmic foci.
-appears to be missing some late stage coverage, candidate for retesting (2025)

Probe prd-RA Links: Permalink

Genes: prd

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Non-Expressed
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 4
   Blastoderm nuclei
    Subset blastoderm nuclei
     Single stripe
     Segmented pattern
      Segment polarity pattern
      Pair-rule pattern
     Dorsal blastoderm nuclei
     Anterior blastoderm nuclei
  Localized
   Subcellular localization patterns
    Ventral localization
    Nuclei-associated localization
     Intranuclear accumulation
      Accumulation in subset nuclei
    Dorsal localization
    Cytoplasmic foci
    Apical localization
     Apical enrichment
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Ventral blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
     Posterior blastoderm nuclei
     Expression in ectoderm
     Dorsal blastoderm nuclei
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
    Apical localization
     Apical enrichment
   Posterior localization
   Embryonic localization patterns
    Ventral localization
    Dorsal localization
 Degraded
  Degraded partially stage 7
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Zygotic starting stage 9
   Zygotic starting stage 8
   Blastoderm nuclei
    Subset blastoderm nuclei
     Ventral blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
     Expression in ectoderm
     Dorsal blastoderm nuclei
 Degraded
  Degraded partially stage 8
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Sensory system
   PNS
   Maxillary complex
   Head
    Head epidermis
   Clypeo-labral bud
  Localized
   Subcellular localization patterns
    Perinuclear localization
     Perinuclear around PNS nuclei

Larva

Area Images Terms

Adult

Area Images Terms

Comments

-performed via HCR-FISH using 3 probe sets targeting the RA isoform transcript
-retested recently for late stage coverage (2025); appears to be expressed in a different program in the gnathal elements and sensory regions in late stages

Probe sc-RA Links: Permalink

Genes: sc

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Zygotic
   Zygotic starting stage 3
   Yolk nuclei
    Subset yolk nuclei
     Random yolk nuclei
  Ubiquitous
  Localized
   Subcellular localization patterns
    Nuclei associated localization
     Intranuclear accumulation
      Accumulation in subset nuclei
    Cytoplasmic foci
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Ventral blastoderm nuclei
     Dorsal blastoderm nuclei
     Anterior blastoderm nuclei
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around blastoderm nuclei
     Intranuclear accumulation
      Accumulation in subset nuclei
    Exclusionary patterns
     Pole cell exclusion
     Apical exclusion
    Cytoplasmic foci
    Basal localization
     Basal enrichment
 Degraded
  Degraded partially stage 4
  Degradation zygotic transcripts
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
     Posterior blastoderm nuclei
     Expression in ectoderm
     Expression in API
     Dorsal blastoderm nuclei
     Anterior blastoderm nuclei
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around blastoderm nuclei
     Intranuclear accumulation
      Accumulation in subset nuclei
    Cytoplasmic foci
    Basal localization
     Basal enrichment
   Posterior localization
   Embryonic localization patterns
    Ventral localization
    Dorsal localization
    Anterior localization
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Ventral blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
     Expression in neuroblasts
     Expression in ectoderm
     Expression in API
  Localized
   Subcellular localization patterns
    Perinuclear localization
     Perinuclear around blastoderm nuclei
    Cytoplasmic foci
    Basal localization
     Basal enrichment
   Embryonic localization patterns
    Anterior localization
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Sensory system
   Segmented pattern
   PNS
   Optic lobes primordium
   Neuroblasts
    Polarized Neuroblasts
   Midgut
   Maxillary complex
   Head
    Head epidermis
   CNS
    Ventral nerve cord
     Polarized VNC
     Perinuclear VNC
     Foci - VNC

Larva

Area Images Terms

Adult

Area Images Terms

Comments

-performed via HCR-FISH using 3 probe sets targeting the RA transcript isoform
-expression seen in the stomatogastric sensory primordium, and the anterior and posterior midgut primordium; forms a complex along with ac (CG3796) so should colocalize in neuronal regions

Probe GH09166 Links: Permalink

Genes: scro

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 4
   Blastoderm nuclei
    Subset blastoderm nuclei
     Single stripe
     Segmented pattern
      Segment polarity pattern
      Gap-gene pattern
     Posterior blastoderm nuclei
  Weak expression (>41ms exp)
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Single stripe
     Segmented pattern
      Segment polarity pattern
      Gap-gene pattern
     Expression in API
  Weak expression (>41ms exp)
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Expression in API
     Expression in amnioserosa
  Weak expression (>41ms exp)
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Head
   CNS
    Ventral nerve cord
   Brain

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Good probe' Weak localized 'foci'.

Probe RE22261 Links: Permalink

Genes: sob

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 4
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Pair-rule pattern
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Pole cell localization
    Cytoplasmic foci
    Basal localization
    Apical localization
     Apical enrichment
      Diffuse apical localization
      Apical clusters
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Sensory system
   Segmented pattern
   Salivary glands
    Salivary glands lumen
   Head
   Ectoderm
   CNS
    Ventral nerve cord
  Localized

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Good probe on gel.
Nice stripes.

Probe RE02607 Links: Permalink

Genes: wg

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 4
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Apical localization
     Apical enrichment
      Diffuse apical localization
   Local terms for zygotic transcripts
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Intranuclear accumulation
      Accumulation nuclear subregion
    Exclusionary patterns
    Apical localization
     Apical enrichment
      Diffuse apical localization
   Local terms for zygotic transcripts
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Segment polarity pattern
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Apical localization
     Apical enrichment
      Diffuse apical localization
      Apical Localization Neuroblasts
   Local terms for zygotic transcripts
   Embryonic localization patterns
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Segmented pattern
   Proventriculus
   Posterior spiracles
   Hindgut
    Specific hindgut area or cells
   Head
   Ectoderm
   Blastoderm nuclei
  Localized

Larva

Area Images Terms

Adult

Area Images Terms
Male reproductive tissues

Comments