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Result Summary

Number of genes 26
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Probe GH01346 Links: Permalink

Genes: CG10096

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Embryonic localization patterns
    Yolk plasm localization
     Yolk plasm enrichment
    Exclusionary patterns
     Yolk cortex exclusion
     Pole plasm excluded
stage 4-5 Stage 4-5
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Yolk plasm localization
     Yolk plasm enrichment
    Exclusionary patterns
     Yolk cortex exclusion
     Pole cell exclusion
     Basal exclusion
     Apical exclusion
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Weak expression (>41ms exp)
  Localized
   Yolk plasm localization
    Yolk plasm enrichment
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Basal localization
     Basal enrichment
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Localized
   Yolk plasm localization
    Yolk plasm enrichment
   Subcellular localization patterns
    Membrane associated
    Exclusionary patterns
     Apical exclusion
    Basal localization
     Basal enrichment
   Embryonic localization patterns
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Salivary glands
    Salivary glands - specific region
   Midgut
   Hindgut
   Head
   Ectoderm
  Localized
   Subcellular localization patterns
    Membrane associated
    Basal enrichment
     Basal in many tissues

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Basal enriched.
Good probe, a bit low.

Probe LD39545 Links: Permalink

Genes: CG10625

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Yolk cortex localization
     Yolk cortex enrichment
    Exclusionary patterns
     Pole cell exclusion
     Apical exclusion
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Maternal
  Localized
   Yolk plasm localization
    Yolk plasm enrichment
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around yolk nuclei
    Exclusionary patterns
     Apical exclusion
    Basal localization
     Basal enrichment
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Maternal
  Localized
   Yolk plasm localization
    Yolk plasm enrichment
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Basal localization
     Basal enrichment
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Re-annotated

Probe SD07707 Links: Permalink

Genes: CG1371

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 4
   Yolk nuclei
    Subset yolk nuclei
     Random yolk nuclei
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Terminal-gene pattern
     Posterior blastoderm nuclei
     Anterior blastoderm nuclei
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Pole cell exclusion
     Apical exclusion
    Cytoplasmic foci
 Degraded
  Degraded partially stage 5
  Degraded partially stage 4
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Terminal-gene pattern
     Posterior blastoderm nuclei
     Anterior blastoderm nuclei
stage 8-9 Stage 8-9
 Expressed
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Cytoplasmic foci
   Embryonic localization patterns

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Re-annotated
Small, clear foci.
Small foci.

Probe GH07188 Links: Permalink

Genes: CG14526

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
   Embryonic localization patterns
    Exclusionary patterns
     Yolk cortex exclusion
stage 4-5 Stage 4-5
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Yolk plasm localization
     Yolk plasm enrichment
    Yolk cortex localization
     Yolk cortex enrichment
    Exclusionary patterns
     Pole cell exclusion
     Apical exclusion
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Zygotic starting stage 8
   Blastoderm nuclei
    Subset blastoderm nuclei
     Expression in ectoderm
     Expression in API
  Localized
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Cytoplasmic foci
    Basal localization
     Basal enrichment
   Embryonic localization patterns
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Sensory system
   Salivary glands
   PNS
   Oenocytes
   Midgut
   Blastoderm nuclei
  Localized
   Subcellular localization patterns
    Perinuclear localization
     Perinuclear around PNS nuclei
    Foci
     Small Foci
      Small Foci in PNS

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Good probe.

Probe SD07085 Links: Permalink

Genes: CG1548

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Medium expression (21-40ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Other subcellular pattern
   Embryonic localization patterns
stage 4-5 Stage 4-5
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Yolk plasm localization
    Yolk cortex localization
     Yolk cortex enrichment
    Exclusionary patterns
     Pole cell exclusion
    Basal localization
     Basal enrichment
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Maternal
  Localized
   Yolk plasm localization
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Exclusionary patterns
    Basal localization
     Basal enrichment
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Maternal
  Localized
   Yolk plasm localization
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Basal localization
     Basal enrichment
   Embryonic localization patterns
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Yolk nuclei
    Perinuclear around yolk nuclei
  Localized
   Subcellular localization patterns
    Perinuclear localization

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Need more images for a better description.
Re-annotated

Probe GH16191 Links: Permalink

Genes: CG31148

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Strong expression (1-20ms exp)
  Maternal
  Localized
   Embryonic localization patterns
    Exclusionary patterns
     Yolk cortex exclusion
     Pole plasm excluded
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 5
   Blastoderm nuclei
    Subset blastoderm nuclei
     Random blastoderm nuclei
  Maternal
  Localized
   Subcellular localization patterns
    Yolk plasm localization
     Yolk plasm enrichment
    Exclusionary patterns
     Pole cell exclusion
    Cytoplasmic foci
 Degraded
  Degraded completely stage 5
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Maternal
  Localized
   Yolk plasm localization
    Yolk plasm enrichment
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Cytoplasmic foci
    Basal localization
     Basal enrichment
   Embryonic localization patterns
stage 8-9 Stage 8-9
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Cytoplasmic foci

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Small foci.
Re-annotated
Small foci. Low expression.
Small foci. Low expression.

Probe LD44769 Links: Permalink

Genes: CG3837

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Medium expression (21-40ms exp)
  Maternal
  Localized
   Embryonic localization patterns
    Yolk plasm localization
     Yolk plasm enrichment
    Exclusionary patterns
     Yolk cortex exclusion
stage 4-5 Stage 4-5
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Yolk plasm localization
     Yolk plasm enrichment
    Exclusionary patterns
     Pole cell exclusion
     Basal exclusion
     Apical exclusion
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Cytoplasmic foci
    Basal localization
     Basal enrichment
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Basal localization
     Basal enrichment
   Embryonic localization patterns

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Small foci.

Probe LD35279 Links: Permalink

Genes: CG4709

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Pole cell exclusion
     Apical exclusion
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Basal localization
     Basal enrichment
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Maternal
  Localized
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Basal localization
     Basal enrichment
   Embryonic localization patterns

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Re-annotated

Probe LD35592 Links: Permalink

Genes: CG5439

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Embryonic localization patterns
    Exclusionary patterns
     Pole plasm excluded
stage 4-5 Stage 4-5
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Pole cell exclusion
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Exclusionary patterns
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Exclusionary patterns
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
 Degraded
  Degraded partially stage 9
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Sensory system
   Segmented pattern
   Oenocytes
   Muscles-embryo
    Muscles - subregion
   Blastoderm nuclei
  Localized
   Subcellular localization patterns
    Perinuclear localization
     Perinuclear around muscle nuclei
    Other subcellular pattern

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Good probe on gel.
Perinuclear muscle attachment cells (maybe).

Probe RE43246 Links: Permalink

Genes: CG6128

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Strong expression (1-20ms exp)
  Maternal
  Localized
   Embryonic localization patterns
    Exclusionary patterns
     Pole plasm excluded
stage 4-5 Stage 4-5
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Yolk cortex exclusion
     Pole cell exclusion
     Apical exclusion
   Embryonic localization patterns
 Degraded
  Degraded partially stage 5
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Basal exclusion
     Apical exclusion
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Maternal
  Localized
   Yolk plasm localization
    Yolk plasm enrichment
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
   Embryonic localization patterns
 Degraded
  Degraded partially stage 8
  Degradation maternal transcripts

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Probe GH12549 Links: Permalink

Genes: CG6282

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Medium expression (21-40ms exp)
  Maternal
  Localized
   Embryonic localization patterns
    Exclusionary patterns
     Pole plasm excluded
stage 4-5 Stage 4-5
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Pole cell exclusion
     Apical exclusion
   Embryonic localization patterns
 Degraded
  Degraded partially stage 5
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
    Basal localization
     Basal enrichment
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Ubiquitous
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Cytoplasmic foci
    Basal localization
     Basal enrichment
   Embryonic localization patterns
 Degraded
  Degraded partially stage 8
  Degradation maternal transcripts

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Small foci.
Re-annotated.

Probe LP01207 Links: Permalink

Genes: CG6608

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Strong expression (1-20ms exp)
  Maternal
  Localized
   Embryonic localization patterns
    Exclusionary patterns
     Yolk cortex exclusion
stage 4-5 Stage 4-5
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Yolk plasm localization
     Yolk plasm enrichment
    Exclusionary patterns
     Yolk plasm exclusion
     Pole cell exclusion
     Basal exclusion
     Apical exclusion
   Embryonic localization patterns
 Degraded
  Degraded partially stage 5
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Maternal
  Localized
   Yolk plasm localization
    Yolk plasm enrichment
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Exclusionary patterns
     Basal exclusion
     Apical exclusion
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
 Degraded
  Degraded partially stage 7
  Degraded partially stage 6
  Degradation maternal transcripts
stage 8-9 Stage 8-9
 Expressed
  Maternal
  Localized
   Yolk plasm localization
    Yolk plasm enrichment
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
   Embryonic localization patterns
 Degraded
  Degraded partially stage 8
  Degradation maternal transcripts

Larva

Area Images Terms

Adult

Area Images Terms

Comments

I wish I had images from stage 10 and older :(
Re-annotated

Probe LD39460 Links: Permalink

Genes: CG7544

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Yolk plasm localization
     Yolk plasm enrichment
    Exclusionary patterns
     Pole cell exclusion
     Apical exclusion
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Maternal
  Localized
   Yolk plasm localization
    Yolk plasm enrichment
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Basal localization
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Maternal
  Localized
   Yolk plasm localization
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Cytoplasmic foci
    Basal localization
     Basal enrichment
   Embryonic localization patterns

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Probe GH28883 Links: Permalink

Genes: CG7990

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Yolk plasm localization
     Yolk plasm enrichment
    Exclusionary patterns
     Yolk cortex exclusion
     Apical exclusion
   Embryonic localization patterns
 Degraded
  Degraded partially stage 5
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around yolk nuclei
    Exclusionary patterns
     Apical exclusion
    Basal localization
     Basal enrichment
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Basal localization
     Basal enrichment
   Embryonic localization patterns
 Degraded
  Degraded partially stage 8
  Degradation maternal transcripts

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Re-annotated

Probe Claspin-RB Links: Permalink

Genes: Claspin

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Ubiquitous
  Maternal
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
 Degraded
  Degraded partially stage 3
stage 4-5 Stage 4-5
 Expressed
  Ubiquitous
  Maternal
  Localized
   Subcellular localization patterns
    Yolk cortex localization
 Degraded
  Degraded partially stage 4
  Degraded completely stage 5
stage 6-7 Stage 6-7
 Expressed
  Zygotic
  Ubiquitous
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around blastoderm nuclei
    Cytoplasmic foci
stage 8-9 Stage 8-9
 Expressed
  Zygotic
  Ubiquitous
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Yolk plasm exclusion
     Yolk cortex exclusion
    Cytoplasmic foci
stage 10-17 Stage 10-17
 Expressed
  Zygotic
  Ubiquitous

Larva

Area Images Terms

Adult

Area Images Terms

Comments

-performed via HCR-FISH using 3 probe sets targeting the RB isoform transcript
-appears to be weakly ubiquitous at all stages but not detectable at latest stages which agrees with modENCODE expression data
-BDGP in situ reports expression in the prothoracic pharyngeal muscles but this was not detected in this experiment

Probe GH12056 Links: Permalink

Genes: None

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Medium expression (21-40ms exp)
  Maternal
  Localized
   Embryonic localization patterns
    Exclusionary patterns
     Pole plasm excluded
stage 4-5 Stage 4-5
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Pole cell exclusion
     Apical exclusion
   Embryonic localization patterns
 Degraded
  Degraded partially stage 5
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Maternal
  Localized
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around yolk nuclei
    Exclusionary patterns
     Apical exclusion
    Basal localization
     Basal enrichment
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Yolk plasm localization
    Yolk plasm enrichment
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Perinuclear localization
     Perinuclear around yolk nuclei
    Exclusionary patterns
     Apical exclusion
    Cytoplasmic foci
   Embryonic localization patterns

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Small foci.
Re-annotated.

Probe RH04426 Links: Permalink

Genes: Hsc70-4

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Ubiquitous
  Strong expression (1-20ms exp)
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Strong expression (1-20ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Ventral localization
    Posterior localization
    Exclusionary patterns
    Basal localization
     Basal enrichment
    Apical localization
     Apical enrichment
      Diffuse apical localization
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Strong expression (1-20ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Other subcellular pattern
    Exclusionary patterns
    Cytoplasmic foci
    Apical localization
     Apical enrichment
      Diffuse apical localization
   Embryonic localization patterns
 Degraded
  Degraded partially stage 7
  Degradation maternal transcripts
stage 8-9 Stage 8-9
 Expressed
  Strong expression (1-20ms exp)
  Localized
   Subcellular localization patterns
    Other subcellular pattern
    Exclusionary patterns
    Apical localization
     Apical enrichment
      Diffuse apical localization
      Apical Localization Neuroblasts
   Embryonic localization patterns
    Ventral localization
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Segmented pattern
   Neuroblasts
   CNS
  Localized

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Ventral nerve cord, midgut, muscles, etc.
Posterior gradient, enriched ventrally. Strong expression.
Good probe on gel.

Probe RE15336 Links: Permalink

Genes: Nos

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Embryonic localization patterns
    Yolk plasm localization
     Yolk plasm enrichment
stage 4-5 Stage 4-5
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Yolk plasm localization
     Yolk plasm enrichment
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around yolk nuclei
    Exclusionary patterns
     Pole cell exclusion
     Basal exclusion
     Apical exclusion
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Yolk plasm localization
    Yolk plasm enrichment
   Subcellular localization patterns
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around yolk nuclei
    Exclusionary patterns
     Apical exclusion
    Basal localization
     Basal enrichment
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Weak expression (>41ms exp)
  Maternal
  Localized
   Yolk plasm localization
    Yolk plasm enrichment
   Subcellular localization patterns
    Perinuclear localization
     Perinuclear around yolk nuclei
    Nuclei-associated localization
    Exclusionary patterns
     Apical exclusion
    Basal localization
     Basal enrichment
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Tracheal system
    Tracheal lumen
    Specific tracheal branches
   Salivary glands
    Salivary glands lumen
   Proventriculus
   Posterior spiracles
    Specific posterior spiracle pattern
   Pharynx
   Hindgut
    Specific hindgut area or cells
    Midgut hindgut border
   Foregut
   CNS
    Ventral nerve cord
  Localized
   Subcellular localization patterns
    Apical enrichment
     Apical enriched hindgut

Larva

Area Images Terms
fat body 3rd Instar Larval Tissues
 Fat body
  Subcellular Localization - Fat body
   Cytoplasmic foci-fat body
  Nascent transcript in fat body
  Expressed in fat body
   Fat body allover - Ubiquitous
intestine 3rd Instar Larval Tissues
 Intestine
  Expressed in proventriculus
   Subcellular localization in proventriculus
    Proventriculus foci
  Expressed in midgut
   Subcellular localization in midgut
    Midgut - foci
   Midgut allover
  Expressed in malpighian tubules
   Subcellular localization in malpighian tubules
    Malpighian tubules - foci
   Malpighian tubules allover
  Expressed in gastric caeca
   Subcellular localization in gastric caeca
    Gastric caeca foci
   Gastric caeca allover
imaginal discs 3rd Instar Larval Tissues
 Imaginal discs
  Expressed in wing disc
   Wing disc pouch
   Wing disc few cells - dots
  Expressed in leg discs
   Leg discs few cells - dots
   Leg discs allover
  Expressed in eye disc
   Morphogenetic furrow
   Eye disc few cells - dots
   Expressed in antennal disc
    Antennal disc few cells - dots
nervous system 3rd Instar Larval Tissues
 Nervous system
  Expressed in brain lobes
   Brain lobes - Foci or dots
salivary gland 3rd Instar Larval Tissues
 Salivary gland
  Subcellular localization in salivary gland
   Salivary gland - Cytoplasmic foci
    Salivary gland - Small foci
  Expressed in salivary glands
   Salivary glands allover
ovary and testis
lymph glands and ring glands 3rd Instar Larval Tissues
 Lymph Glands and Ring Glands
  Ring gland
   Ring gland - Subcellular localization
    Ring gland - Cytoplasmic foci
     Ring gland - Few and small foci
   Expressed in ring gland
    Ring gland allover
  Lymph Glands
   Expressed in lymph glands
    Lymph glands all over

Adult

Area Images Terms

Comments

Home made probe exon 16. Good probe.

Probe CG7434 Links: Permalink

Genes: RpL22

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Zygotic
  Ubiquitous
  Medium expression (21-40ms exp)
  Maternal
stage 6-7 Stage 6-7
 Expressed
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear around all nuclei
stage 8-9 Stage 8-9
 Expressed
  Zygotic
  Ubiquitous
  Medium expression (21-40ms exp)
  Localized
   Subcellular localization patterns
    Perinuclear localization
     Perinuclear around yolk nuclei
     Perinuclear around pole cell nuclei
    Exclusionary patterns
     Apical exclusion
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Midgut
   Hindgut
   Foregut
  Ubiquitous
  Medium expression (21-40ms exp)
  Localized

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Probe CG4046 Links: Permalink

Genes: RpS16

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
  Localized
   Subcellular localization patterns
    Nuclei associated localization
     Intranuclear accumulation
      Accumulation nuclear subregion
stage 4-5 Stage 4-5
 Expressed
  Zygotic
  Ubiquitous
  Medium expression (21-40ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Pole cell exclusion
     Apical exclusion
    Cytoplasmic foci
    Basal localization
stage 6-7 Stage 6-7
 Expressed
  Zygotic
  Ubiquitous
  Medium expression (21-40ms exp)
  Localized
   Yolk plasm localization
    Yolk plasm enrichment
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear around all nuclei
    Exclusionary patterns
     Apical exclusion
    Basal localization
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Yolk nuclei
    All yolk nuclei
   Germ cell nuclei
    All pole cell nuclei
  Ubiquitous
  Strong expression (1-20ms exp)
  Localized
   Subcellular localization patterns
    Perinuclear localization
     Perinuclear around all nuclei
    Exclusionary patterns
     Apical exclusion
    Basal localization
   Germ cell localization
    Germ cell enrichment
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Midgut
   Hindgut
   Foregut
  Ubiquitous
  Strong expression (1-20ms exp)
  Localized
   Subcellular localization patterns
    Basal enrichment

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Probe AT20865 Links: Permalink

Genes: Ubi-p63E

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
 Degraded
  Degraded partially stage 5
  Degradation maternal transcripts
stage 6-7 Stage 6-7
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Expression in neuroblasts
     Expression in mesoderm
     Expression in ectoderm
     Expression in amnioserosa
  Medium expression (21-40ms exp)
  Localized
   Subcellular localization patterns
    Membrane associated
    Exclusionary patterns
   Embryonic localization patterns
    Ventral localization
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Salivary glands
   PNS
   Head
   Ectoderm
   CNS
    Ventral nerve cord
   Blastoderm nuclei
   Amnioserosa
  Localized
   Subcellular localization patterns
    Perinuclear localization
     Perinuclear around ectoderm nuclei
     Perinuclear around CNS nuclei
    Membrane associated

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Good but low probe on gel.
Salivary glands, probably non-specific.

Probe Vha100-1-ex Links: Permalink

Genes: Vha100-1

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Ubiquitous
  Maternal
stage 6-7 Stage 6-7
 Expressed
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Basal localization
stage 8-9 Stage 8-9
 Expressed
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Basal localization
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Sensory system
   Midgut
    Midgut subset
   Garland cell
   CNS
    Ventral nerve cord
   Brain
  Weak expression (>41ms exp)
  Ubiquitous

Larva

Area Images Terms

Adult

Area Images Terms

Comments

-performed via HCR-FISH using 3 probe sets targeting the common exons

Probe LD22761 Links: Permalink

Genes: caz

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Pole cell exclusion
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
   Embryonic localization patterns
    Exclusionary patterns
     Pole cell exclusion
stage 8-9 Stage 8-9
 Expressed
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
   Embryonic localization patterns
    Germ band localization
    Exclusionary patterns
     Pole cell exclusion

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Re-annotated

Probe LP07057 Links: Permalink

Genes: fwd

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Ubiquitous
  Strong expression (1-20ms exp)
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 4
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Gap-gene pattern
     Posterior blastoderm nuclei
     Anterior blastoderm nuclei
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Pole cell exclusion
    Cytoplasmic foci
    Basal localization
     Basal enrichment
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Expression in mesoderm
  Localized
   Subcellular localization patterns
    Basal localization
     Basal enrichment
   Embryonic localization patterns
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Ventral blastoderm nuclei
     Segmented pattern
      Pair-rule pattern
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Apical exclusion
    Basal localization
     Basal enrichment
   Embryonic localization patterns
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Yolk nuclei
    Perinuclear around yolk nuclei
   Tracheal system
    Tracheal pits
   PNS
   Muscles-embryo
    Visceral mesoderm
   Head
   Ectoderm
   CNS
    Ventral nerve cord
     Foci - VNC
   Blastoderm nuclei
   Atrium
  Localized
   Subcellular localization patterns
    Perinuclear localization
    Foci
     Small Foci
      Small Foci in PNS
      Small Foci in CNS
    Cell junction associated

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Interesting
Low probe on gel.
Interesting patterns. Salivary glands, maybe non-specific.
Interesting

Probe RE02556 Links: Permalink

Genes: loner

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 4
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Gap-gene pattern
    All blastoderm nuclei
     Transiently widespread
  Weak expression (>41ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Exclusionary patterns
     Pole cell exclusion
    Cell division apparatus
     Other cell division pattern
     Centrosomal localization
    Basal localization
     Basal enrichment
    Apical localization
     Apical enrichment
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Segmented pattern
      Gap-gene pattern
     Expression in mesoderm
     Expression in ectoderm
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Exclusionary patterns
    Cytoplasmic foci
   Embryonic localization patterns
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Blastoderm nuclei
    Subset blastoderm nuclei
     Expression in neuroblasts
     Expression in mesoderm
  Weak expression (>41ms exp)
  Localized
   Subcellular localization patterns
    Exclusionary patterns
   Embryonic localization patterns
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Tracheal system
   Salivary glands
    Salivary glands lumen
   Posterior spiracles
   Head
   CNS
    Ventral nerve cord
   Blastoderm nuclei
   Amnioserosa
  Localized

Larva

Area Images Terms

Adult

Area Images Terms

Comments

Very nice expression pattern.
Low probe on gel.

Probe zen-RA Links: Permalink

Genes: zen

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Zygotic
   Zygotic starting stage 3
  Ubiquitous
  Localized
   Subcellular localization patterns
    Nuclei associated localization
     Intranuclear accumulation
      Accumulation in subset nuclei
    Cytoplasmic foci
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Pole cell nuclei
    Subset pole cell nuclei
   Blastoderm nuclei
    Subset blastoderm nuclei
     Posterior blastoderm nuclei
     Dorsal blastoderm nuclei
     Anterior blastoderm nuclei
  Localized
   Subcellular localization patterns
    Yolk cortex localization
     Yolk cortex enrichment
    Ventral localization
    Posterior localization
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around blastoderm nuclei
    Exclusionary patterns
     Yolk plasm exclusion
     Yolk cortex exclusion
    Basal localization
    Apical localization
     Apical enrichment
    Anterior localization
   Embryonic localization patterns
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Pole cell nuclei
    Subset pole cell nuclei
   Blastoderm nuclei
    Subset blastoderm nuclei
     Expression in ectoderm
     Expression in API
     Dorsal blastoderm nuclei
  Localized
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around pole cell nuclei
       Perinuclear around blastoderm nuclei
     Intranuclear accumulation
      Accumulation in subset nuclei
    Exclusionary patterns
     Yolk plasm exclusion
     Yolk cortex exclusion
    Cytoplasmic foci
   Pole cell localization
    Pole cell enrichment
   Embryonic localization patterns
    Dorsal localization
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Germ cell nuclei
    Subset pole cell nuclei
   Blastoderm nuclei
    Subset blastoderm nuclei
     Expression in ectoderm
     Expression in API
     Expression in amnioserosa
     Dorsal blastoderm nuclei
  Localized
   Yolk cortex localization
    Yolk cortex enrichment
   Subcellular localization patterns
    Perinuclear localization
     Perinuclear around pole cell nuclei
    Exclusionary patterns
     Yolk plasm exclusion
     Yolk cortex exclusion
    Cytoplasmic foci
    Basal localization
   Germ cell localization
    Germ cell enrichment
   Embryonic localization patterns
    Dorsal localization
 Degraded
  Degraded partially stage 9
stage 10-17 Stage 10-17
 Non-Expressed

Larva

Area Images Terms

Adult

Area Images Terms

Comments

-performed via HCR-FISH using 3 probe sets targeting the RA transcript isoform
-neat expression patterns in early embryos and early germ band elongation stages; expression is no longer detectable after stage 9-10 (fits modENCODE RNA-seq data well)