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Result Summary

Number of genes	42
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Probe GH23463 Links: Permalink

Genes: 18w

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Non-Expressed
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Weak expression (>41ms exp) Localized Subcellular localization patterns Apical localization Apical enrichment Apical clusters
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Weak expression (>41ms exp) Localized Subcellular localization patterns Basal localization Basal enrichment
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Weak expression (>41ms exp) Localized
stage 10-17		Stage 10-17 Expressed Zygotic Tracheal system Tracheal pits Segmented pattern Head Blastoderm nuclei

Larva

Area	Images	Terms
fat body		3rd Instar Larval Tissues Fat body Expressed in fat body Fat body allover - Ubiquitous
intestine		3rd Instar Larval Tissues Intestine Expressed in midgut Subcellular localization in midgut Midgut - foci Midgut allover Expressed in malpighian tubules Subcellular localization in malpighian tubules Malpighian tubules - foci Malpighian tubules allover Expressed in gastric caeca Gastric caeca allover
imaginal discs		3rd Instar Larval Tissues Imaginal discs Not expressed in imaginal discs
nervous system		3rd Instar Larval Tissues Nervous system Not expressed in nervous system
salivary gland		3rd Instar Larval Tissues Salivary gland Not expressed in salivary glands
lymph glands and ring glands		3rd Instar Larval Tissues Lymph Glands and Ring Glands Ring gland Expressed in ring gland Ring gland allover Lymph Glands Not expressed in lymph glands

Adult

Area	Images	Terms

Comments

insitu done in 2006 by Eric's group.

Probe LP05501 Links: Permalink

Genes: Alhambra

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Gap-gene pattern Ubiquitous Maternal
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Expression in mesoderm Expression in ectoderm
stage 10-17		Stage 10-17 Expressed Zygotic Segmented pattern

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Re-annotated 2014.

Probe LD39923 Links: Permalink

Genes: Ama

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Ventral blastoderm nuclei Segmented pattern Pair-rule pattern Localized Subcellular localization patterns Apical localization Apical enrichment Diffuse apical localization Apical clusters Local terms for zygotic transcripts
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Ventral blastoderm nuclei Segmented pattern Pair-rule pattern Dorsal blastoderm nuclei Localized Subcellular localization patterns Nuclei-associated localization Intranuclear accumulation Accumulation nuclear subregion Basal localization Apical localization Apical enrichment Apical clusters Local terms for zygotic transcripts
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern Expression in API Localized Subcellular localization patterns Apical localization Apical enrichment Local terms for zygotic transcripts

Larva

Area	Images	Terms
fat body		3rd Instar Larval Tissues Fat body Expressed in fat body Fat body allover - Ubiquitous
intestine		3rd Instar Larval Tissues Intestine Not expressed in the intestine
imaginal discs		3rd Instar Larval Tissues Imaginal discs Expressed in wing disc Wing disc few cells - dots Basal wing disc localization Expressed in leg discs Leg discs few cells - dots Leg discs - outside Expressed in eye disc Eye disc photo-receptors Eye disc few cells - dots Eye disc basal Eye disc - center round cells
nervous system		3rd Instar Larval Tissues Nervous system Expressed in ventral nerve cord Localized to axons Borderline between 'not expressed' and 'low expression'
salivary gland		3rd Instar Larval Tissues Salivary gland Not expressed in salivary glands
lymph glands and ring glands		3rd Instar Larval Tissues Lymph Glands and Ring Glands Ring gland Expressed in ring gland Ring gland allover Borderline between 'not expressed' and 'low expression' Lymph Glands Subcellular localization in lymph glands Lymph Glands - Cytoplasmic foci Lymph Glands - Few cytoplasmic foci Expressed in lymph glands

Adult

Area	Images	Terms

Comments

Re-annotated

It is hard to distinguish if the axons in the larval ventral nerve cord are 'axons' or 'tracheal extensions'

Probe LP05915 Links: Permalink

Genes: Best1

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Maternal Localized Subcellular localization patterns Yolk plasm localization Yolk plasm enrichment Exclusionary patterns Pole cell exclusion Basal exclusion Apical exclusion Embryonic localization patterns Degraded Degraded partially stage 5 Degradation maternal transcripts
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Localized Subcellular localization patterns Exclusionary patterns Embryonic localization patterns Exclusionary patterns Pole cell exclusion
stage 8-9		Stage 8-9 Expressed
stage 10-17		Stage 10-17 Expressed Zygotic Yolk nuclei Yolk nuclei 'foci' Perinuclear around yolk nuclei Inside Yolk nuclei Esophagus Ectoderm Localized Subcellular localization patterns Perinuclear localization Nuclei-associated localization Nuclear in ectoderm Accumulation nuclear subregion Foci Small Foci Small Foci in ectoderm Bigger Foci

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Partly nascent, partly sub-nuclear.

Lowish probe on gel.

Probe RE20251 Links: Permalink

Genes: CG10035

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Localized Subcellular localization patterns Exclusionary patterns Pole cell exclusion Apical localization Apical enrichment Apical clusters Embryonic localization patterns
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Localized Subcellular localization patterns Exclusionary patterns Apical localization Apical enrichment Apical clusters Embryonic localization patterns Exclusionary patterns Pole cell exclusion
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Expression in ectoderm Expression in amnioserosa Localized Subcellular localization patterns Perinuclear localization Perinuclear subset of nuclei Nuclei-associated localization Intranuclear accumulation Accumulation nuclear subregion Cytoplasmic foci
stage 10-17		Stage 10-17 Expressed Zygotic Tracheal system Tracheal pits Segmented pattern Oenocytes Muscles-embryo Visceral mesoderm Head Blastoderm nuclei Localized Subcellular localization patterns Perinuclear localization Perinuclear around ectoderm nuclei Foci Small Foci Small Foci in tracheal cells Small Foci in ectoderm

Larva

Area	Images	Terms
fat body		3rd Instar Larval Tissues Fat body Subcellular Localization - Fat body Fat body - Nuclear localization Fat body - Subnuclear localization Cytoplasmic foci-fat body Nascent transcript in fat body Expressed in fat body Fat body allover - Ubiquitous
intestine		3rd Instar Larval Tissues Intestine Expressed in midgut Subcellular localization in midgut Midgut - foci Midgut allover Expressed in hindgut Hindgut allover Hindgut - Midgut border Expressed in gastric caeca Gastric caeca allover
nervous system		3rd Instar Larval Tissues Nervous system Expressed in brain lobes Optic lobe Brain lobes - Significant area Brain lobes - Foci or dots
salivary gland		3rd Instar Larval Tissues Salivary gland Subcellular localization in salivary gland Salivary gland - subnuclear Salivary gland - nuclear dots Salivary gland - Cytoplasmic foci Nascent transcript in salivary gland Expressed in salivary glands Salivary glands allover
ovary and testis		Adult Tissues Male reproductive tissues Testis 3rd Instar Larval Tissues Larval Ovary and Testis-Larva Testis allover - Larva
lymph glands and ring glands		3rd Instar Larval Tissues Lymph Glands and Ring Glands Ring gland Ring gland - Subcellular localization Ring gland - Cytoplasmic foci Ring gland - Few and small foci Expressed in ring gland Ring gland allover

Adult

Area	Images	Terms

Comments

Good probe on gel.

Probe RE73396 Links: Permalink

Genes: CG14427

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Yolk nuclei Subset yolk nuclei Random yolk nuclei Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Anterior blastoderm nuclei Weak expression (>41ms exp) Localized Subcellular localization patterns Nuclei-associated localization Perinuclear localization Perinuclear subset of nuclei Perinuclear around yolk nuclei Apical localization Apical enrichment Diffuse apical localization Local terms for zygotic transcripts Embryonic localization patterns
stage 6-7		Stage 6-7 Expressed Zygotic Yolk Nuclei Subset yolk nuclei Random yolk nuclei Blastoderm nuclei Subset blastoderm nuclei Expression in ectoderm Weak expression (>41ms exp) Localized Subcellular localization patterns Nuclei-associated localization Perinuclear localization Perinuclear subset of nuclei Perinuclear around yolk nuclei Apical localization Apical enrichment Diffuse apical localization Local terms for zygotic transcripts Embryonic localization patterns
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Expression in ectoderm Expression in amnioserosa Weak expression (>41ms exp) Localized Local terms for zygotic transcripts Degraded Degraded completely stage 8 Degradation maternal transcripts

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Probe RE01453 Links: Permalink

Genes: CG15211

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 5 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Gap-gene pattern Weak expression (>41ms exp) Localized Subcellular localization patterns Nuclei-associated localization Intranuclear accumulation Accumulation nuclear subregion Membrane associated Exclusionary patterns Pole cell exclusion Apical localization Apical enrichment Embryonic localization patterns
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Weak expression (>41ms exp) Localized Subcellular localization patterns Nuclei-associated localization Intranuclear accumulation Accumulation nuclear subregion Exclusionary patterns Embryonic localization patterns Exclusionary patterns Pole cell exclusion
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Expression in mesoderm Weak expression (>41ms exp)
stage 10-17		Stage 10-17 Expressed Zygotic Ectoderm Blastoderm nuclei

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Good probe on gel.

Probe GM01959 Links: Permalink

Genes: CG2915

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Ubiquitous Maternal Degraded Degraded partially stage 3 Degraded partially stage 2
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Ubiquitous Maternal Degraded Degraded partially stage 4 Degradation maternal transcripts
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Expression in mesoderm
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Expression in mesoderm Degraded Degraded partially stage 9 Degraded partially stage 8
stage 10-17		Stage 10-17 Expressed Zygotic Sensory system

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Probe GH16858 Links: Permalink

Genes: CG30015

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Non-Expressed
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Weak expression (>41ms exp) Localized Subcellular localization patterns Apical localization Apical enrichment Diffuse apical localization Embryonic localization patterns
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Posterior blastoderm nuclei Weak expression (>41ms exp) Localized Subcellular localization patterns Apical localization Apical enrichment Diffuse apical localization Embryonic localization patterns
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Weak expression (>41ms exp)

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Re-annotated.

Probe GH22734 Links: Permalink

Genes: CG30015

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Maternal Localized Subcellular localization patterns Cytoplasmic foci
stage 4-5		Stage 4-5 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Weak expression (>41ms exp) Maternal Localized Subcellular localization patterns Exclusionary patterns Pole cell exclusion Apical localization Apical enrichment Embryonic localization patterns
stage 6-7		Stage 6-7 Expressed Weak expression (>41ms exp) Localized Subcellular localization patterns Exclusionary patterns Cell junction associated Posterior localization Embryonic localization patterns Exclusionary patterns Pole cell exclusion
stage 8-9		Stage 8-9 Expressed Localized Subcellular localization patterns Perinuclear localization Perinuclear around pole cell nuclei Cytoplasmic foci
stage 10-17		Stage 10-17 Expressed Zygotic Tracheal system Tracheal pits Salivary glands Salivary glands lumen Pharynx Muscles-embryo Visceral mesoderm Hindgut Specific hindgut area or cells Head Ectoderm Blastoderm nuclei Localized Subcellular localization patterns Foci Small Foci Small Foci in tracheal cells Cell junction associated Basal enrichment Basal in hindgut

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Good probe on gel.

Probe RE27439 Links: Permalink

Genes: CG6634

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal Localized Subcellular localization patterns Cytoplasmic foci
stage 4-5		Stage 4-5 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Weak expression (>41ms exp) Localized Subcellular localization patterns Exclusionary patterns Yolk cortex exclusion Pole cell exclusion Apical exclusion Degraded Degraded partially stage 5 Degradation maternal transcripts
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern Pair-rule pattern Localized Subcellular localization patterns Nuclei-associated localization Intranuclear accumulation Accumulation nuclear subregion Apical localization Apical enrichment Embryonic localization patterns Exclusionary patterns Pole cell exclusion
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern Localized Subcellular localization patterns Cytoplasmic foci Basal localization Basal enrichment
stage 10-17		Stage 10-17 Expressed Zygotic Segmented pattern Posterior spiracles Ectoderm Dorsal vessel Dorsal vessel specific pattern CNS Ventral nerve cord Brain Atrium Localized Subcellular localization patterns Foci Small Foci Small Foci in other tissues Small Foci in head Small Foci in ectoderm Apical enrichment Apical in other tissues

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Low probe on gel.

Nice patterns!

Probe CR46452-RA Links: Permalink

Genes: CR46452

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Non-Expressed
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Ventral blastoderm nuclei Segmented pattern Pair-rule pattern Dorsal blastoderm nuclei Ubiquitous Localized Subcellular localization patterns Ventral localization Nuclei-associated localization Perinuclear localization Perinuclear subset of nuclei Exclusionary patterns Pole cell exclusion Apical exclusion Dorsal localization Cytoplasmic foci Basal localization Basal enrichment
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Ventral blastoderm nuclei Segmented pattern Pair-rule pattern Ubiquitous Localized Subcellular localization patterns Nuclei-associated localization Perinuclear localization Perinuclear subset of nuclei Perinuclear around blastoderm nuclei Cytoplasmic foci Embryonic localization patterns Ventral localization Degraded Degraded partially stage 6
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Expression in mesoderm Expression in ectoderm Localized Subcellular localization patterns Cytoplasmic foci Embryonic localization patterns Germ band localization Degraded Degraded partially stage 8 Degraded completely stage 9
stage 10-17		Stage 10-17 Non-Expressed

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

-performed via HCR-FISH using 3 probe sets targeting the RA isoform transcript

-interesting 7-stripe pattern observed in the blastoderm/epidermis

Probe RH72992 Links: Permalink

Genes: Cys

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Non-Expressed
stage 4-5		Stage 4-5 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Weak expression (>41ms exp) Maternal Localized Subcellular localization patterns Yolk cortex localization Yolk cortex enrichment Exclusionary patterns Pole cell exclusion Basal localization Basal enrichment Embryonic localization patterns
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Weak expression (>41ms exp) Localized Subcellular localization patterns Nuclei-associated localization Perinuclear localization Perinuclear subset of nuclei Perinuclear around blastoderm nuclei Intranuclear accumulation Accumulation nuclear subregion Membrane associated Cytoplasmic foci Cell division apparatus Basal localization Basal enrichment Apical localization Apical enrichment Apical clusters Embryonic localization patterns
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Expression in neuroblasts Expression in mesoderm Localized Subcellular localization patterns Apical localization Apical enrichment Apical Localization Neuroblasts Embryonic localization patterns

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Stripes.

Good probe on gel.________ Important note: these images are from probe RH01620 from plate AM25 (RA.324), position A8 (8) Same CG number (CG8050)

Probe RE02264 Links: Permalink

Genes: ECSIT

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 5 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern Pair-rule pattern Gap-gene pattern Weak expression (>41ms exp) Maternal Localized Subcellular localization patterns Exclusionary patterns Pole cell exclusion Apical localization Apical enrichment Apical clusters Embryonic localization patterns
stage 6-7		Stage 6-7 Expressed Zygotic Zygotic starting stage 6 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern Weak expression (>41ms exp) Localized Subcellular localization patterns Nuclei-associated localization Intranuclear accumulation Accumulation nuclear subregion Accumulation in subset nuclei Apical localization Apical enrichment Apical clusters Embryonic localization patterns
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern Weak expression (>41ms exp) Localized
stage 10-17		Stage 10-17 Expressed Zygotic Proventriculus Hindgut Specific hindgut area or cells Germ cell nuclei Gonads Ectoderm Blastoderm nuclei Localized

Larva

Area	Images	Terms
fat body		3rd Instar Larval Tissues Fat body Subcellular Localization - Fat body Cytoplasmic foci-fat body Expressed in fat body Fat body allover - Ubiquitous
intestine		3rd Instar Larval Tissues Intestine Expressed in proventriculus Proventriculus allover Expressed in pharynx Pharynx particular pattern Expressed in malpighian tubules Subcellular localization in malpighian tubules Malpighian tubules - foci Malpighian tubules allover Expressed in gastric caeca Gastric caeca allover
imaginal discs		3rd Instar Larval Tissues Imaginal discs Expressed in wing disc Wing disc pouch Wing disc few cells - dots Wing disc allover Basal wing disc localization Expressed in leg discs Leg discs few cells - dots Expressed in eye disc Morphogenetic furrow Eye disc photo-receptors Eye disc few cells - dots Eye disc basal Eye disc apical Eye disc allover Eye disc - center round cells Expressed in antennal disc Antennal disc few cells - dots
nervous system		3rd Instar Larval Tissues Nervous system Expressed in ventral nerve cord Ventral nerve cord - foci or 'dots' Borderline between 'not expressed' and 'low expression'
salivary gland		3rd Instar Larval Tissues Salivary gland Expressed in salivary glands Salivary glands allover Borderline between 'not expressed' and 'low expression'
muscles		3rd Instar Larval Tissues Larval Muscles - larva Expressed in larval muscles-Larva Sub-cellular localization in muscles-Larva Larval Muscles - Cytoplasmic foci
lymph glands and ring glands		3rd Instar Larval Tissues Lymph Glands and Ring Glands Ring gland Ring gland - Subcellular localization Ring gland - Cytoplasmic foci Expressed in ring gland Ring gland allover Lymph Glands Subcellular localization in lymph glands Lymph Glands - Cytoplasmic foci Expressed in lymph glands Lymph glands all over

Adult

Area	Images	Terms

Comments

The wingless probe is on the next row of the same plate... Potential cross-contamination.

Good probe on gel.

Probe SD07266 Links: Permalink

Genes: ImpL2

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Non-Expressed
stage 4-5		Stage 4-5 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Probe SD03917 Links: Permalink

Genes: Neu3

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 5 Blastoderm nuclei Subset blastoderm nuclei Ventral blastoderm nuclei Segmented pattern Pair-rule pattern Gap-gene pattern Random blastoderm nuclei Weak expression (>41ms exp) Maternal Localized Subcellular localization patterns Yolk plasm localization Yolk plasm enrichment Exclusionary patterns Pole cell exclusion Apical exclusion Embryonic localization patterns Degraded Degraded partially stage 4 Degradation maternal transcripts
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Gap-gene pattern Expression in ectoderm Weak expression (>41ms exp) Localized Subcellular localization patterns Nuclei-associated localization Intranuclear accumulation Accumulation nuclear subregion Exclusionary patterns Apical exclusion Cytoplasmic foci Embryonic localization patterns Exclusionary patterns Pole cell exclusion
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Ventral blastoderm nuclei Expression in neuroblasts Expression in ectoderm Weak expression (>41ms exp) Localized Subcellular localization patterns Nuclei-associated localization Intranuclear accumulation Accumulation nuclear subregion Cytoplasmic foci
stage 10-17		Stage 10-17 Expressed Zygotic Head Ectoderm CNS Ventral nerve cord Blastoderm nuclei Localized Subcellular localization patterns Foci Small Foci Small Foci in head Small Foci in ectoderm

Larva

Area	Images	Terms
fat body		3rd Instar Larval Tissues Fat body Subcellular Localization - Fat body Cytoplasmic foci-fat body Expressed in fat body Fat body allover - Ubiquitous
intestine		3rd Instar Larval Tissues Intestine Expressed in malpighian tubules Subcellular localization in malpighian tubules Malpighian tubules - foci Malpighian tubules few foci Malpighian tubules allover
imaginal discs		3rd Instar Larval Tissues Imaginal discs Not expressed in imaginal discs
nervous system		3rd Instar Larval Tissues Nervous system Expressed in ventral nerve cord Ventral nerve cord - foci or 'dots' Expressed in brain lobes Brain lobes - Foci or dots
salivary gland		3rd Instar Larval Tissues Salivary gland Not expressed in salivary glands
lymph glands and ring glands		3rd Instar Larval Tissues Lymph Glands and Ring Glands Ring gland Ring gland - Subcellular localization Ring gland - Cytoplasmic foci Ring gland - Few and small foci Expressed in ring gland Ring gland allover Borderline between 'not expressed' and 'low expression' Lymph Glands Subcellular localization in lymph glands Lymph Glands - Cytoplasmic foci Lymph Glands - Few cytoplasmic foci Expressed in lymph glands

Adult

Area	Images	Terms

Comments

Not all Nascent... Some nuclei have clearly one big dot (not two), sometimes right at the edge of the DAPI staining. Also, some cytoplasmic foci.

Good probe on gel.

Not all Nascent... Some nuclei have clearly one big dot (not two), sometimes right at the edge of the DAPI staining. Also, some cytoplasmic foci. Salivary glands, probably non-specific.

Probe RE05137 Links: Permalink

Genes: Ppa

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Zygotic Cortical nuclei All cortical nuclei Weak expression (>41ms exp) Ubiquitous Maternal Localized Subcellular localization patterns Nuclei associated localization Cytoplasmic foci Cell division apparatus Chromatin associated metaphase Embryonic localization patterns Exclusionary patterns Pole plasm excluded
stage 4-5		Stage 4-5 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Gap-gene pattern Localized Subcellular localization patterns Exclusionary patterns Pole cell exclusion Apical localization Apical enrichment
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Localized Subcellular localization patterns Basal localization Basal enrichment Apical localization Apical enrichment
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Expression in neuroblasts Ubiquitous Localized Subcellular localization patterns Apical localization Apical enrichment
stage 10-17		Stage 10-17 Expressed Zygotic Salivary glands Midgut Ectoderm Localized Subcellular localization patterns Apical enrichment Apical ectoderm

Larva

Area	Images	Terms
intestine		3rd Instar Larval Tissues Intestine Expressed in midgut Subcellular localization in midgut Midgut - Nuclear Midgut - Subnuclear Nascent transcript in midgut Expressed in malpighian tubules Subcellular localization in malpighian tubules Malpighian tubules - Nuclear in Malpighian tubules - Subnuclear in Nascent transcript in malpighian tubules Malpighian tubules allover Expressed in hindgut Subcellular localization in hindgut Hindgut membranes Nascent transcript in hindgut Hindgut allover Expressed in gastric caeca Subcellular localization in gastric caeca Gastric caeca - nuclear localization Gastric caeca - subnuclear localization Nascent transcript in gastric caeca Gastric caeca allover
nervous system		3rd Instar Larval Tissues Nervous system Expressed in brain lobes Optic lobe Brain lobes allover Brain lobes - Significant area
lymph glands and ring glands		3rd Instar Larval Tissues Lymph Glands and Ring Glands Ring gland Ring gland - Subcellular localization Ring gland - Nuclear Ring gland - Subnuclear Nascent transcript in ring gland Lymph Glands Subcellular localization in lymph glands Lymph Glands - Cytoplasmic foci Expressed in lymph glands Lymph glands all over

Adult

Area	Images	Terms

Comments

Probe RE54375 Links: Permalink

Genes: SNCF

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Zygotic Cortical nuclei Subset cortical nuclei Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Yolk nuclei All yolk nuclei Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Medium expression (21-40ms exp) Maternal Localized Subcellular localization patterns Nuclei-associated localization Perinuclear localization Perinuclear subset of nuclei Perinuclear around yolk nuclei Exclusionary patterns Pole cell exclusion Embryonic localization patterns
stage 6-7		Stage 6-7 Expressed Zygotic Yolk Nuclei All yolk nuclei Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Strong expression (1-20ms exp) Localized Subcellular localization patterns Nuclei-associated localization Perinuclear localization Perinuclear subset of nuclei Perinuclear around yolk nuclei Degraded Degraded completely stage 7 Degradation zygotic transcripts
stage 8-9		Stage 8-9 Non-Expressed

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Probe RE68041 Links: Permalink

Genes: Sema5c

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Ubiquitous Medium expression (21-40ms exp) Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Medium expression (21-40ms exp) Maternal Localized Subcellular localization patterns Exclusionary patterns Pole cell exclusion Apical exclusion Embryonic localization patterns Degraded Degraded completely stage 4 Degradation maternal transcripts
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Strong expression (1-20ms exp) Localized Subcellular localization patterns Basal localization Basal enrichment Local terms for zygotic transcripts
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Expression in ectoderm Expression in amnioserosa Strong expression (1-20ms exp)
stage 10-17		Stage 10-17 Expressed Zygotic Segmented pattern Ectoderm Localized

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Probe LD39479 Links: Permalink

Genes: asp

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Strong expression (1-20ms exp) Maternal Localized Subcellular localization patterns Nuclei associated localization Pronucleus-associated Anterior localization Embryonic localization patterns
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern All blastoderm nuclei Maternal Localized Subcellular localization patterns Posterior localization Pole cell localization Pole cell enrichment Cytoplasmic foci Apical localization Apical enrichment Diffuse apical localization Anterior localization Embryonic localization patterns Degraded Degraded partially stage 5 Degraded partially stage 4 Degradation maternal transcripts
stage 6-7		Stage 6-7 Expressed Localized Subcellular localization patterns Apical localization Apical enrichment Diffuse apical localization Local terms for zygotic transcripts Embryonic localization patterns
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Expression in mesoderm Localized Subcellular localization patterns Apical localization Apical enrichment Diffuse apical localization Apical Localization Neuroblasts Local terms for zygotic transcripts Embryonic localization patterns
stage 10-17		Stage 10-17 Expressed Zygotic Neuroblasts Polarized Neuroblasts CNS Ventral nerve cord Brain Blastoderm nuclei Localized Subcellular localization patterns Foci Small Foci Small Foci in CNS Apical enrichment Apical in other tissues

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Re-annotated

Neuroblasts

Probe RE06383 Links: Permalink

Genes: comm2

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Localized Subcellular localization patterns Yolk cortex localization Yolk cortex enrichment Exclusionary patterns Pole cell exclusion Apical localization Apical enrichment
stage 10-17		Stage 10-17 Expressed Zygotic Segmented pattern Salivary glands Midgut Ectoderm Amnioserosa Localized Subcellular localization patterns Foci Small Foci Small Foci in ectoderm Small Foci in amnioserosa

Larva

Area	Images	Terms
fat body		3rd Instar Larval Tissues Fat body Expressed in fat body Fat body allover - Ubiquitous
intestine		3rd Instar Larval Tissues Intestine Expressed in midgut Subcellular localization in midgut Midgut - Perinuclear Midgut - Nuclear Midgut - Subnuclear Midgut - foci Specific midgut cells Midgut allover Expressed in malpighian tubules Subcellular localization in malpighian tubules Malpighian tubules - Perinuclear Malpighian tubules - foci Nascent transcript in malpighian tubules Malpighian tubules allover Expressed in hindgut Subcellular localization in hindgut Nuclear in hindgut Hindgut - subnuclear localization Hindgut perinuclear Hindgut foci Few hindgut foci Nascent transcript in hindgut Hindgut allover Hindgut - Midgut border
nervous system		3rd Instar Larval Tissues Nervous system Expressed in brain lobes Optic lobe Brain lobes - Significant area Brain lobes - Foci or dots

Adult

Area	Images	Terms

Comments

Good probe on gel.

Probe RE34993 Links: Permalink

Genes: dpn

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Localized Subcellular localization patterns Exclusionary patterns Pole cell exclusion Apical localization Apical enrichment Degraded Degraded partially stage 4 Degradation maternal transcripts
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Localized Subcellular localization patterns Apical localization Apical enrichment Posterior localization
stage 10-17		Stage 10-17 Expressed Zygotic Sensory system PNS CNS Ventral nerve cord Perinuclear VNC Brain Localized Subcellular localization patterns Perinuclear localization Perinuclear polarized Perinuclear around PNS nuclei Perinuclear around CNS nuclei Foci Small Foci Small Foci in CNS

Larva

Area	Images	Terms
fat body		3rd Instar Larval Tissues Fat body Expressed in fat body Fat body allover - Ubiquitous Borderline between 'not expressed' and 'low expression'
intestine		3rd Instar Larval Tissues Intestine Not expressed in the intestine
imaginal discs		3rd Instar Larval Tissues Imaginal discs Expressed in eye disc Eye disc particular pattern
nervous system		3rd Instar Larval Tissues Nervous system Expressed in ventral nerve cord Ventral nerve cord - perinuclear localization Ventral nerve cord - foci or 'dots' Expressed in brain lobes Brain lobes allover Brain lobes - Significant area Brain lobes - Foci or dots
salivary gland		3rd Instar Larval Tissues Salivary gland Not expressed in salivary glands
muscles		3rd Instar Larval Tissues Larval Muscles - larva Expressed in larval muscles-Larva Muscles allover - Larva
lymph glands and ring glands		3rd Instar Larval Tissues Lymph Glands and Ring Glands Ring gland Not expressed in ring gland

Adult

Area	Images	Terms

Comments

Good probe on gel.

Probe RE20611 Links: Permalink

Genes: dpp

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal Localized Subcellular localization patterns Cytoplasmic foci
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Yolk nuclei Subset yolk nuclei Random yolk nuclei Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Random blastoderm nuclei Weak expression (>41ms exp) Localized Subcellular localization patterns Exclusionary patterns Pole cell exclusion Apical localization Apical enrichment Apical clusters Embryonic localization patterns
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Weak expression (>41ms exp) Localized Subcellular localization patterns Exclusionary patterns Apical localization Apical enrichment Apical clusters Embryonic localization patterns Exclusionary patterns Pole cell exclusion
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Expression in neuroblasts Expression in ectoderm Localized Subcellular localization patterns Apical localization Apical enrichment Embryonic localization patterns
stage 10-17		Stage 10-17 Expressed Zygotic Tracheal system Tracheal pits Tracheal lumen Specific tracheal branches Dorsal trunk Neuroblasts Muscles-embryo Visceral mesoderm Specific visceral mesoderm pattern Midgut Hindgut Head Ectoderm Blastoderm nuclei Atrium Amnioserosa Localized Subcellular localization patterns Foci Small Foci Small Foci in other tissues Small Foci in midgut Small Foci in hindgut Small Foci in head Small Foci in ectoderm Small Foci in amnioserosa Apical enrichment Apical enriched hindgut

Larva

Area	Images	Terms
fat body		3rd Instar Larval Tissues Fat body Subcellular Localization - Fat body Fat body - Perinuclear localization Fat body - Nuclear localization Fat body - Subnuclear localization Nascent transcript in fat body Expressed in fat body Fat body allover - Ubiquitous
intestine		3rd Instar Larval Tissues Intestine Expressed in proventriculus Subcellular localization in proventriculus Proventriculus foci Nascent transcript in proventriculus Expressed in midgut Subcellular localization in midgut Midgut - Nuclear Midgut - Subnuclear Nascent transcript in midgut Midgut allover Expressed in hindgut Hindgut - Midgut border Expressed in gastric caeca Gastric caeca allover
nervous system		3rd Instar Larval Tissues Nervous system Expressed in brain lobes Brain lobes - Significant area
ovary and testis		3rd Instar Larval Tissues Larval Ovary and Testis-Larva Ovary allover Expressed in Ovary
muscles		3rd Instar Larval Tissues Larval Muscles - larva Expressed in larval muscles-Larva Sub-cellular localization in muscles-Larva Larval Muscles - Cytoplasmic foci Muscles allover - Larva

Adult

Area	Images	Terms

Comments

Clear patches of cells close to the invaginating tracheal placodes.

Good probe on gel. RNA is allover, with some small but clear foci.

Probe LD26791 Links: Permalink

Genes: drm

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Non-Expressed
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Yolk nuclei Subset yolk nuclei Pole cell nuclei Subset pole cell nuclei Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Terminal-gene pattern Pair-rule pattern
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Terminal-gene pattern Pair-rule pattern
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern
stage 10-17		Stage 10-17 Expressed Zygotic Tracheal system Tracheal pits Segmented pattern Midgut Head Ectoderm Blastoderm nuclei

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Re-annotated

Need more photos for a better description.

Probe LD16125 Links: Permalink

Genes: en

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Non-Expressed
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

-missing late stage expression patterns, worth retesting to get full picture (2024)

Probe eve-RA Links: Permalink

Genes: eve

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Non-Expressed
stage 4-5		Stage 4-5 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Localized Subcellular localization patterns Degraded Degraded partially stage 5 Degraded partially stage 4
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern Degraded Degraded partially stage 7 Degraded partially stage 6
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Expression in ectoderm Dorsal blastoderm nuclei Localized Embryonic localization patterns Degraded Degraded partially stage 8
stage 10-17		Stage 10-17 Expressed Zygotic Dorsal vessel Dorsal vessel specific pattern CNS Ventral nerve cord Foci - VNC Anal pad Ring around anal pad Localized Subcellular localization patterns Foci Small Foci Small Foci in dorsal vessel

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

-probes were designed against eve-RA isoform transcript

-tested using HCR-FISH probes (3 probe sets)

-very neat stripe patterns

Probe GH10421 Links: Permalink

Genes: for

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Ubiquitous Strong expression (1-20ms exp) Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 5 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Terminal-gene pattern Pair-rule pattern Maternal Localized Subcellular localization patterns Exclusionary patterns Pole cell exclusion Apical exclusion Embryonic localization patterns Degraded Degraded partially stage 5 Degradation maternal transcripts
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Terminal-gene pattern Pair-rule pattern Degraded Degraded completely stage 6 Degradation maternal transcripts
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Terminal-gene pattern Segment polarity pattern
stage 10-17		Stage 10-17 Expressed Zygotic Midgut Head

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Re-annotated.

Need more images for a more complete description.

Probe RE40955 Links: Permalink

Genes: h

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Strong expression (1-20ms exp) Localized Subcellular localization patterns Apical localization Apical enrichment Diffuse apical localization Degraded Degraded partially stage 4 Degradation maternal transcripts
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Strong expression (1-20ms exp) Localized Subcellular localization patterns Apical localization Apical enrichment Diffuse apical localization Degraded Degraded partially stage 6 Degraded completely stage 7 Degradation zygotic transcripts
stage 8-9		Stage 8-9 Expressed Weak expression (>41ms exp) Ubiquitous

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Probe GH07529 Links: Permalink

Genes: l(2)08717

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Yolk nuclei Subset yolk nuclei Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern All blastoderm nuclei Transiently widespread Maternal Localized Subcellular localization patterns Exclusionary patterns Pole cell exclusion Apical exclusion Degraded Degraded partially stage 4 Degraded completely stage 5 Degradation maternal transcripts
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Dorsal blastoderm nuclei
stage 8-9		Stage 8-9 Expressed Zygotic Yolk nuclei Subset yolk nuclei Random yolk nuclei Blastoderm nuclei Subset blastoderm nuclei Random blastoderm nuclei Expression in amnioserosa Anterior blastoderm nuclei
stage 10-17		Stage 10-17 Expressed Zygotic Hemocytes

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

re-annotated

Amnioserosa cells.

Need more photos for a better description. in situ done in 2006.

Probe GH11519 Links: Permalink

Genes: mfas

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Right flanking nuclei Left flanking nuclei Localized Subcellular localization patterns Nuclei-associated localization Intranuclear accumulation Accumulation nuclear subregion Accumulation in subset nuclei Degraded Degraded partially stage 4 Degraded completely stage 5 Degradation maternal transcripts
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Right flanking nuclei Left flanking nuclei Localized Subcellular localization patterns Nuclei-associated localization Intranuclear accumulation Accumulation nuclear subregion Accumulation in subset nuclei
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Single stripe Segmented pattern Segment polarity pattern Expression in neuroblasts Localized Subcellular localization patterns Nuclei-associated localization Intranuclear accumulation Accumulation nuclear subregion Accumulation in subset nuclei
stage 10-17		Stage 10-17 Expressed Zygotic Yolk nuclei Perinuclear around yolk nuclei Tracheal system Tracheal pits Segmented pattern Neuroblasts CNS Ventral nerve cord Polarized CNS Blastoderm nuclei Localized Subcellular localization patterns Perinuclear localization

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Probe RE34782 Links: Permalink

Genes: nub

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Gap-gene pattern Localized Subcellular localization patterns Basal localization Basal enrichment Apical localization Apical enrichment Degraded Degraded partially stage 5 Degraded partially stage 4 Degradation maternal transcripts
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Gap-gene pattern
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Expression in neuroblasts
stage 10-17		Stage 10-17 Expressed Zygotic Neuroblasts Head CNS Ventral nerve cord Perinuclear VNC Localized Subcellular localization patterns Perinuclear localization Perinuclear around CNS nuclei Foci Small Foci Small Foci in CNS

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Low probe on gel.

Probe RE48009 Links: Permalink

Genes: odd

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Maternal Localized Embryonic localization patterns Exclusionary patterns Pole plasm excluded
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Localized Subcellular localization patterns Exclusionary patterns Pole cell exclusion Cell division apparatus Spindle midzone localization Chromatin associated metaphase Apical localization Apical enrichment Diffuse apical localization Local terms for zygotic transcripts Embryonic localization patterns
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern Localized Subcellular localization patterns Apical localization Apical enrichment Diffuse apical localization Local terms for zygotic transcripts Embryonic localization patterns
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern Localized Subcellular localization patterns Apical localization Apical enrichment Apical Localization Neuroblasts Local terms for zygotic transcripts Embryonic localization patterns
stage 10-17		Stage 10-17 Expressed Zygotic Segmented pattern Ectoderm Localized Subcellular localization patterns Apical enrichment Apical ectoderm

Larva

Area	Images	Terms
fat body		3rd Instar Larval Tissues Fat body Subcellular Localization - Fat body Cytoplasmic foci-fat body Expressed in fat body Fat body allover - Ubiquitous
intestine		3rd Instar Larval Tissues Intestine Expressed in gastric caeca Subcellular localization in gastric caeca Gastric caeca foci Gastric caeca allover
imaginal discs		3rd Instar Larval Tissues Imaginal discs Expressed in leg discs Leg discs particular pattern Leg discs few cells - dots Expressed in eye disc Morphogenetic furrow Eye disc few cells - dots
nervous system		3rd Instar Larval Tissues Nervous system
salivary gland		3rd Instar Larval Tissues Salivary gland Not expressed in salivary glands Borderline between 'not expressed' and 'low expression'
muscles		3rd Instar Larval Tissues Larval Muscles - larva Expressed in larval muscles-Larva Sub-cellular localization in muscles-Larva Larval Muscles - Cytoplasmic foci Muscles allover - Larva
lymph glands and ring glands		3rd Instar Larval Tissues Lymph Glands and Ring Glands Ring gland Ring gland - Subcellular localization Ring gland - Cytoplasmic foci Ring gland - Few and small foci Expressed in ring gland Ring gland allover

Adult

Area	Images	Terms

Comments

It is hard to distinguish if the axons in the larval ventral nerve cord are 'axons' or 'tracheal extensions.

Probe RE01138 Links: Permalink

Genes: Ppa

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Zygotic Zygotic starting stage 3 Yolk nuclei Subset yolk nuclei Random yolk nuclei Cortical nuclei Subset cortical nuclei Random cortical nuclei Weak expression (>41ms exp) Maternal Localized Subcellular localization patterns Cytoplasmic foci Cell division apparatus Other cell division pattern Chromatin associated metaphase Embryonic localization patterns Exclusionary patterns Pole plasm excluded
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Yolk nuclei Subset yolk nuclei Random yolk nuclei Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Gap-gene pattern All blastoderm nuclei Weak expression (>41ms exp) Localized Subcellular localization patterns Exclusionary patterns Pole cell exclusion Cell division apparatus Other cell division pattern Centrosomal localization Basal localization Basal enrichment Apical localization Apical enrichment Diffuse apical localization Embryonic localization patterns
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Expression in mesoderm Expression in API Weak expression (>41ms exp) Localized Subcellular localization patterns Nuclei-associated localization Perinuclear localization Perinuclear subset of nuclei Perinuclear around blastoderm nuclei Membrane associated Exclusionary patterns Basal localization Basal enrichment Apical localization Apical enrichment Diffuse apical localization Embryonic localization patterns Exclusionary patterns Pole cell exclusion
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Expression in neuroblasts Expression in mesoderm Expression in ectoderm Weak expression (>41ms exp) Localized Subcellular localization patterns Perinuclear localization Perinuclear around blastoderm nuclei Membrane associated Embryonic localization patterns
stage 10-17		Stage 10-17 Expressed Zygotic Segmented pattern Proventriculus Posterior spiracles Foregut Ectoderm Blastoderm nuclei Localized

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Good probe on gel, a bit low.

Apical expression stops at the posterior -interesting-.

Probe GH22686 Links: Permalink

Genes: prd

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Non-Expressed
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Localized Subcellular localization patterns Cytoplasmic foci Apical localization Apical enrichment Diffuse apical localization Embryonic localization patterns
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern Localized Subcellular localization patterns Apical localization Apical enrichment Diffuse apical localization Embryonic localization patterns

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Zygotic RNA exhibits diffuse apical localization. During nuclear divisions, the RNA localizes in cytoplasmic foci.

-appears to be missing some late stage coverage, candidate for retesting (2025)

Probe prd-RA Links: Permalink

Genes: prd

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Non-Expressed
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Single stripe Segmented pattern Segment polarity pattern Pair-rule pattern Dorsal blastoderm nuclei Anterior blastoderm nuclei Localized Subcellular localization patterns Ventral localization Nuclei-associated localization Intranuclear accumulation Accumulation in subset nuclei Dorsal localization Cytoplasmic foci Apical localization Apical enrichment
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Ventral blastoderm nuclei Segmented pattern Segment polarity pattern Posterior blastoderm nuclei Expression in ectoderm Dorsal blastoderm nuclei Localized Subcellular localization patterns Cytoplasmic foci Apical localization Apical enrichment Posterior localization Embryonic localization patterns Ventral localization Dorsal localization Degraded Degraded partially stage 7
stage 8-9		Stage 8-9 Expressed Zygotic Zygotic starting stage 9 Zygotic starting stage 8 Blastoderm nuclei Subset blastoderm nuclei Ventral blastoderm nuclei Segmented pattern Segment polarity pattern Expression in ectoderm Dorsal blastoderm nuclei Degraded Degraded partially stage 8
stage 10-17		Stage 10-17 Expressed Zygotic Sensory system PNS Maxillary complex Head Head epidermis Clypeo-labral bud Localized Subcellular localization patterns Perinuclear localization Perinuclear around PNS nuclei

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

-performed via HCR-FISH using 3 probe sets targeting the RA isoform transcript

-retested recently for late stage coverage (2025); appears to be expressed in a different program in the gnathal elements and sensory regions in late stages

Probe GH02614 Links: Permalink

Genes: run

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Zygotic Zygotic starting stage 3 Cortical nuclei All cortical nuclei Localized Subcellular localization patterns Cell division apparatus Spindle midzone localization Local terms for zygotic transcripts
stage 4-5		Stage 4-5 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern All blastoderm nuclei Transiently widespread Localized Subcellular localization patterns Cell division apparatus Spindle midzone localization Chromatin associated metaphase Apical localization Apical enrichment Diffuse apical localization Local terms for zygotic transcripts Embryonic localization patterns
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Localized Subcellular localization patterns Apical localization Apical enrichment Diffuse apical localization Local terms for zygotic transcripts Embryonic localization patterns
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern Localized Subcellular localization patterns Apical localization Apical enrichment Diffuse apical localization Local terms for zygotic transcripts Embryonic localization patterns
stage 10-17		Stage 10-17 Expressed Zygotic Tracheal system Sensory system Segmented pattern Salivary glands PNS Brain Blastoderm nuclei Localized

Larva

Area	Images	Terms
fat body		3rd Instar Larval Tissues Fat body Subcellular Localization - Fat body Cytoplasmic foci-fat body Expressed in fat body Fat body allover - Ubiquitous
intestine		3rd Instar Larval Tissues Intestine Expressed in midgut Subcellular localization in midgut Midgut - foci Midgut allover Expressed in malpighian tubules Subcellular localization in malpighian tubules Malpighian tubules - foci Malpighian tubules allover Expressed in gastric caeca Gastric caeca allover
imaginal discs		3rd Instar Larval Tissues Imaginal discs Expressed in wing disc Wing disc pouch Wing disc few cells - dots Expressed in eye disc Eye disc few cells - dots Expressed in antennal disc Antennal disc few cells - dots
nervous system		3rd Instar Larval Tissues Nervous system Expressed in ventral nerve cord Ventral nerve cord - foci or 'dots' Localized to axons
salivary gland		3rd Instar Larval Tissues Salivary gland Expressed in salivary glands Salivary glands allover
lymph glands and ring glands		3rd Instar Larval Tissues Lymph Glands and Ring Glands Ring gland Ring gland - Subcellular localization Ring gland - Cytoplasmic foci Ring gland - Few and small foci Expressed in ring gland Ring gland allover Borderline between 'not expressed' and 'low expression' Lymph Glands Not expressed in lymph glands

Adult

Area	Images	Terms
Male reproductive tissues

Comments

It is hard to distinguish if the axons in the larval ventral nerve cord are 'axons' or 'tracheal extensions.

Probe RE38281 Links: Permalink

Genes: sca

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Strong expression (1-20ms exp) Localized Subcellular localization patterns Nuclei-associated localization Perinuclear localization Perinuclear subset of nuclei Perinuclear around blastoderm nuclei Exclusionary patterns Pole cell exclusion Cell division apparatus Chromatin associated metaphase Apical localization Apical enrichment Diffuse apical localization Local terms for zygotic transcripts Embryonic localization patterns
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Strong expression (1-20ms exp) Localized Subcellular localization patterns Exclusionary patterns Apical localization Apical enrichment Apical clusters Local terms for zygotic transcripts Embryonic localization patterns Exclusionary patterns Pole cell exclusion
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Expression in neuroblasts Expression in ectoderm Strong expression (1-20ms exp) Localized Subcellular localization patterns Apical localization Apical enrichment Apical Localization Neuroblasts
stage 10-17		Stage 10-17 Expressed Zygotic Segmented pattern PNS CNS Ventral nerve cord Brain Blastoderm nuclei Localized Subcellular localization patterns Perinuclear localization Perinuclear around PNS nuclei Perinuclear around CNS nuclei

Larva

Area	Images	Terms
fat body		3rd Instar Larval Tissues Fat body Expressed in fat body Fat body allover - Ubiquitous
intestine		3rd Instar Larval Tissues Intestine Expressed in proventriculus Subcellular localization in proventriculus Proventriculus foci Proventriculus - Few foci Proventriculus allover Expressed in malpighian tubules Subcellular localization in malpighian tubules Malpighian tubules - foci Malpighian tubules allover Expressed in hindgut Subcellular localization in hindgut Hindgut foci Expressed in gastric caeca Subcellular localization in gastric caeca Gastric caeca foci Gastric caeca allover Expressed in esophagus
imaginal discs		3rd Instar Larval Tissues Imaginal discs Expressed in wing disc Wing disc pouch Expressed in eye disc Morphogenetic furrow Eye disc few cells - dots Expressed in antennal disc Antennal disc few cells - dots
nervous system		3rd Instar Larval Tissues Nervous system Not expressed in nervous system
salivary gland		3rd Instar Larval Tissues Salivary gland Subcellular localization in salivary gland Salivary gland - Cytoplasmic foci Salivary gland - Small foci Expressed in salivary glands Salivary glands allover
muscles		3rd Instar Larval Tissues Larval Muscles - larva Expressed in larval muscles-Larva Sub-cellular localization in muscles-Larva Larval Muscles - Cytoplasmic foci
lymph glands and ring glands		3rd Instar Larval Tissues Lymph Glands and Ring Glands Ring gland Ring gland - Subcellular localization Ring gland - Cytoplasmic foci Expressed in ring gland Ring gland allover Lymph Glands Subcellular localization in lymph glands Lymph Glands - Cytoplasmic foci Expressed in lymph glands Lymph glands all over

Adult

Area	Images	Terms

Comments

Probe RE11345 Links: Permalink

Genes: slp2

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Non-Expressed
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Single stripe Segmented pattern Pair-rule pattern
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Localized Subcellular localization patterns Basal localization Basal enrichment
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Localized Subcellular localization patterns Cytoplasmic foci
stage 10-17		Stage 10-17 Expressed Zygotic Segmented pattern Head Ectoderm Blastoderm nuclei Localized Subcellular localization patterns Foci Small Foci Small Foci in ectoderm

Larva

Area	Images	Terms
fat body		3rd Instar Larval Tissues Fat body Subcellular Localization - Fat body Cytoplasmic foci-fat body Expressed in fat body Fat body allover - Ubiquitous
intestine		3rd Instar Larval Tissues Intestine Not expressed in the intestine
nervous system		3rd Instar Larval Tissues Nervous system Expressed in brain lobes Brain lobes - Foci or dots
salivary gland		3rd Instar Larval Tissues Salivary gland Not expressed in salivary glands
muscles		3rd Instar Larval Tissues Larval Muscles - larva Expressed in larval muscles-Larva Sub-cellular localization in muscles-Larva Larval Muscles - Cytoplasmic foci Muscles allover - Larva

Adult

Area	Images	Terms
Male reproductive tissues		Adult Tissues Male reproductive tissues Testis Testis Cell type and stage - TE Terminal Epithelium - TE Cytoplasmic in terminal epithelium - TE Spermatogonium-TE Cytoplasmic in spermatogonium-TE Spermatocytes -TE Cytoplasmic in Spermatocytes - TE Spermatids -TE Individualizing Spermatids - TE Cytoplasmic in individualizing spermatids - TE Elongating Spermatids - TE Cytoplasmic in elongating spermatids-TE Early elongating spermatids-TE Cytoplasmic in early elongating spermatids Cyst cells -TE Tail cyst cell - TE Elongating Tail Cyst Cell - TE Elongating Tail Cyst Cell Cytoplasm - TE Subcellularly localized - TE Expression level-TE Expressed Low - TE Distal tip region-TE Expressed in distal tip region - TE Lower expression in tip region Seminal Vesicle Subcellularly localized - SV Lumenal-SV Scattered Foci - SV Cell type - SV Cytoplasmic-SV Membrane enriched - SV Cytoplasmic Foci - SV Ejaculatory Duct Subcellularly localized - ED Expression level-ED Expressed Low - ED Cell type - ED Cytoplasmic-ED Membrane enriched - ED Accessory Gland Subcellularly localized - AG Lumenal - AG Non-particulate - AG Expression level-AG Expressed Low - AG Cell type - AG Secondary cells - AG Cytoplasmic-SC Main cells -AG Cytoplasmic-MC Membrane Enriched-MC

Comments

Small, clear foci.

Good probe on gel. Some photos from a different day.

Probe RE22261 Links: Permalink

Genes: sob

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Weak expression (>41ms exp) Maternal Localized Subcellular localization patterns Pole cell localization Cytoplasmic foci Basal localization Apical localization Apical enrichment Diffuse apical localization Apical clusters Embryonic localization patterns
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern Weak expression (>41ms exp) Localized Subcellular localization patterns Cytoplasmic foci
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern
stage 10-17		Stage 10-17 Expressed Zygotic Sensory system Segmented pattern Salivary glands Salivary glands lumen Head Ectoderm CNS Ventral nerve cord Localized

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Good probe on gel.

Nice stripes.

Probe HL07357 Links: Permalink

Genes: tna

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal Degraded Degraded partially stage 3 Degradation maternal transcripts
stage 4-5		Stage 4-5 Expressed Zygotic Yolk nuclei All yolk nuclei Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Segment polarity pattern Pair-rule pattern Gap-gene pattern Posterior blastoderm nuclei Anterior blastoderm nuclei Maternal Localized Subcellular localization patterns Nuclei-associated localization Perinuclear localization Perinuclear subset of nuclei Perinuclear around yolk nuclei Perinuclear around blastoderm nuclei Exclusionary patterns Pole cell exclusion Degraded Degraded completely stage 5 Degradation maternal transcripts
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Localized Subcellular localization patterns Exclusionary patterns Embryonic localization patterns Exclusionary patterns Pole cell exclusion Degraded Degradation zygotic transcripts
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Expression in ectoderm

Larva

Area	Images	Terms
fat body		3rd Instar Larval Tissues Fat body Subcellular Localization - Fat body Cytoplasmic foci-fat body Expressed in fat body Fat body allover - Ubiquitous
intestine		3rd Instar Larval Tissues Intestine Expressed in midgut Subcellular localization in midgut Midgut - foci Midgut - Axons Expressed in malpighian tubules Subcellular localization in malpighian tubules Malpighian tubules - foci Malpighian tubules allover Expressed in hindgut Subcellular localization in hindgut Hindgut Axons Hindgut - Midgut border Expressed in gastric caeca Gastric caeca allover
imaginal discs		3rd Instar Larval Tissues Imaginal discs Expressed in leg discs Leg discs few cells - dots Expressed in eye disc Morphogenetic furrow Eye disc photo-receptors Eye disc few cells - dots Eye disc allover Expressed in antennal disc Antennal disc few cells - dots
nervous system		3rd Instar Larval Tissues Nervous system Expressed in ventral nerve cord Ventral nerve cord - nuclear localization Ventral nerve cord - foci or 'dots' Ventral nerve cord - allover Localized to axons Expressed in brain lobes Brain lobes - Foci or dots
salivary gland		3rd Instar Larval Tissues Salivary gland Subcellular localization in salivary gland Salivary gland - subnuclear Salivary gland - Perinuclear Salivary gland - Cytoplasmic foci Salivary gland - Small foci Nascent transcript in salivary gland Expressed in salivary glands Salivary glands allover
ovary and testis		Adult Tissues Male reproductive tissues Testis 3rd Instar Larval Tissues Larval Ovary and Testis-Larva Testis allover - Larva Specific testis expression localization Larval testis foci Testis foci outside-Larva
muscles		3rd Instar Larval Tissues Larval Muscles - larva Expressed in larval muscles-Larva
lymph glands and ring glands		3rd Instar Larval Tissues Lymph Glands and Ring Glands Ring gland Nascent transcript in ring gland Expressed in ring gland Ring gland allover

Adult

Area	Images	Terms

Comments

It is hard to distinguish if the axons in the larval ventral nerve cord are 'axons' or 'tracheal extensions.

Probe GH10871 Links: Permalink

Genes: trn

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Maternal Localized Subcellular localization patterns Cytoplasmic foci Embryonic localization patterns Yolk plasm localization Yolk plasm enrichment Exclusionary patterns Pole plasm excluded
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 4 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Medium expression (21-40ms exp) Localized Subcellular localization patterns Apical localization Apical enrichment Apical clusters
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Expression in ectoderm
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Expression in neuroblasts Expression in ectoderm Localized Subcellular localization patterns Perinuclear localization Perinuclear around blastoderm nuclei Nuclei-associated localization Apical localization Apical enrichment Apical Localization Neuroblasts
stage 10-17		Stage 10-17 Expressed Zygotic Sensory system Segmented pattern Salivary glands Salivary glands lumen Ring gland Proventriculus PNS Pharynx Midgut Midgut subset Hindgut Specific hindgut area or cells Head Foregut Ectoderm Polarized Ectoderm CNS Ventral nerve cord Perinuclear VNC Brain Blastoderm nuclei Localized Subcellular localization patterns Perinuclear localization Perinuclear polarized Perinuclear around ectoderm nuclei Perinuclear around CNS nuclei Nuclei-associated localization Nuclear in ectoderm Accumulation entire nucleus

Larva

Area	Images	Terms

Adult

Area	Images	Terms

Comments

Neuroblast, interesting.

Nice stripes!

Lowish, good probe. Very nice insitu!

Probe AT13666 Links: Permalink

Genes: upd1

Embryo

Area	Images	Terms
stage 1-3		Stage 1-3 Expressed Weak expression (>41ms exp) Ubiquitous Maternal
stage 4-5		Stage 4-5 Expressed Zygotic Zygotic starting stage 5 Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Pair-rule pattern Weak expression (>41ms exp) Ubiquitous Maternal
stage 6-7		Stage 6-7 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Expression in ectoderm Weak expression (>41ms exp) Degraded Degraded partially stage 7 Degradation maternal transcripts
stage 8-9		Stage 8-9 Expressed Zygotic Blastoderm nuclei Subset blastoderm nuclei Segmented pattern Expression in ectoderm Weak expression (>41ms exp)
stage 10-17		Stage 10-17 Expressed Zygotic Blastoderm nuclei

Larva

Area	Images	Terms

Adult

Area	Images	Terms
Male reproductive tissues		Adult Tissues Male reproductive tissues Testis Testis Cell type and stage - TE Spermatogonium-TE Cytoplasmic in spermatogonium-TE Spermatocytes -TE Late Spermatocytes- TE Cytoplasmic in late spermatocytes - TE Cytoplasmic in Spermatocytes - TE Spermatids -TE Individualizing Spermatids - TE Cystic bulge - TE Elongating Spermatids - TE Cytoplasmic in elongating spermatids-TE Cyst cells -TE Tail cyst cell - TE Spermatocyte Tail Cyst Cell - TE Spermatocyte Tail Cyst Cell Cytoplasm - TE Round Tail Cyst Cell - TE Round Tail Cyst Cell Cytoplasm - TE Head cyst cell - TE Cytoplasmic - Head cyst cell Subcellularly localized - TE Expression level-TE Expressed High - TE Distal tip region-TE Expressed in distal tip region - TE Specific tip region cells-TE Early cyst cell Cytoplasmic in early cyst cell Clusters in early cyst cell-TE Higher expression in tip region Seminal Vesicle Subcellularly localized - SV Lumenal-SV Non-particulate - SV Cell type - SV Cytoplasmic-SV Cytoplasmic Foci - SV Ejaculatory Duct Subcellularly localized - ED Expression level-ED Expressed Low - ED Cell type - ED Cytoplasmic-ED Cytoplasmic Foci - ED Accessory Gland Subcellularly localized - AG Expression level-AG Expressed Medium - AG Cell type - AG Secondary cells - AG Cytoplasmic-SC Cytoplasmic foci-SC Main cells -AG Cytoplasmic-MC Cytoplasmic Foci - AG