Area	Images	Terms
stage 1-3		Stage 1-3  Expressed   Zygotic    Zygotic starting stage 3    Yolk nuclei     Subset yolk nuclei      Random yolk nuclei   Ubiquitous   Localized    Subcellular localization patterns     Nuclei associated localization      Intranuclear accumulation       Accumulation in subset nuclei     Cytoplasmic foci
stage 4-5		Stage 4-5  Expressed   Zygotic    Blastoderm nuclei     Subset blastoderm nuclei      Ventral blastoderm nuclei      Dorsal blastoderm nuclei      Anterior blastoderm nuclei   Localized    Subcellular localization patterns     Nuclei-associated localization      Perinuclear localization       Perinuclear subset of nuclei        Perinuclear around blastoderm nuclei      Intranuclear accumulation       Accumulation in subset nuclei     Exclusionary patterns      Pole cell exclusion      Apical exclusion     Cytoplasmic foci     Basal localization      Basal enrichment  Degraded   Degraded partially stage 4   Degradation zygotic transcripts
stage 6-7		Stage 6-7  Expressed   Zygotic    Blastoderm nuclei     Subset blastoderm nuclei      Segmented pattern       Segment polarity pattern      Posterior blastoderm nuclei      Expression in ectoderm      Expression in API      Dorsal blastoderm nuclei      Anterior blastoderm nuclei   Localized    Subcellular localization patterns     Nuclei-associated localization      Perinuclear localization       Perinuclear subset of nuclei        Perinuclear around blastoderm nuclei      Intranuclear accumulation       Accumulation in subset nuclei     Cytoplasmic foci     Basal localization      Basal enrichment    Posterior localization    Embryonic localization patterns     Ventral localization     Dorsal localization     Anterior localization
stage 8-9		Stage 8-9  Expressed   Zygotic    Blastoderm nuclei     Subset blastoderm nuclei      Ventral blastoderm nuclei      Segmented pattern       Segment polarity pattern      Expression in neuroblasts      Expression in ectoderm      Expression in API   Localized    Subcellular localization patterns     Perinuclear localization      Perinuclear around blastoderm nuclei     Cytoplasmic foci     Basal localization      Basal enrichment    Embryonic localization patterns     Anterior localization
stage 10-17		Stage 10-17  Expressed   Zygotic    Sensory system    Segmented pattern    PNS    Optic lobes primordium    Neuroblasts     Polarized Neuroblasts    Midgut    Maxillary complex    Head     Head epidermis    CNS     Ventral nerve cord      Polarized VNC      Perinuclear VNC      Foci - VNC

Area	Images	Terms

Area	Images	Terms

-performed via HCR-FISH using 3 probe sets targeting the RA transcript isoform

-expression seen in the stomatogastric sensory primordium, and the anterior and posterior midgut primordium; forms a complex along with ac (CG3796) so should colocalize in neuronal regions

Area	Images	Terms
stage 1-3		Stage 1-3  Expressed   Zygotic    Zygotic starting stage 3   Ubiquitous   Localized    Subcellular localization patterns     Nuclei associated localization      Intranuclear accumulation       Accumulation in subset nuclei     Cytoplasmic foci
stage 4-5		Stage 4-5  Expressed   Zygotic    Pole cell nuclei     Subset pole cell nuclei    Blastoderm nuclei     Subset blastoderm nuclei      Posterior blastoderm nuclei      Dorsal blastoderm nuclei      Anterior blastoderm nuclei   Localized    Subcellular localization patterns     Yolk cortex localization      Yolk cortex enrichment     Ventral localization     Posterior localization     Nuclei-associated localization      Perinuclear localization       Perinuclear subset of nuclei        Perinuclear around blastoderm nuclei     Exclusionary patterns      Yolk plasm exclusion      Yolk cortex exclusion     Basal localization     Apical localization      Apical enrichment     Anterior localization    Embryonic localization patterns
stage 6-7		Stage 6-7  Expressed   Zygotic    Pole cell nuclei     Subset pole cell nuclei    Blastoderm nuclei     Subset blastoderm nuclei      Expression in ectoderm      Expression in API      Dorsal blastoderm nuclei   Localized    Yolk cortex localization     Yolk cortex enrichment    Subcellular localization patterns     Nuclei-associated localization      Perinuclear localization       Perinuclear subset of nuclei        Perinuclear around pole cell nuclei        Perinuclear around blastoderm nuclei      Intranuclear accumulation       Accumulation in subset nuclei     Exclusionary patterns      Yolk plasm exclusion      Yolk cortex exclusion     Cytoplasmic foci    Pole cell localization     Pole cell enrichment    Embryonic localization patterns     Dorsal localization
stage 8-9		Stage 8-9  Expressed   Zygotic    Germ cell nuclei     Subset pole cell nuclei    Blastoderm nuclei     Subset blastoderm nuclei      Expression in ectoderm      Expression in API      Expression in amnioserosa      Dorsal blastoderm nuclei   Localized    Yolk cortex localization     Yolk cortex enrichment    Subcellular localization patterns     Perinuclear localization      Perinuclear around pole cell nuclei     Exclusionary patterns      Yolk plasm exclusion      Yolk cortex exclusion     Cytoplasmic foci     Basal localization    Germ cell localization     Germ cell enrichment    Embryonic localization patterns     Dorsal localization  Degraded   Degraded partially stage 9
stage 10-17		Stage 10-17  Non-Expressed

Area	Images	Terms

Area	Images	Terms

-performed via HCR-FISH using 3 probe sets targeting the RA transcript isoform

-neat expression patterns in early embryos and early germ band elongation stages; expression is no longer detectable after stage 9-10 (fits modENCODE RNA-seq data well)