CR45138

Links: FlyBase, BDGP InSitu, DOT, Permalink

Probe CR45138 Links: Permalink

Genes: CR45138

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Expressed
  Weak expression (>41ms exp)
  Ubiquitous
  Maternal
  Localized
   Subcellular localization patterns
    Nuclei associated localization
     Perinuclear localization
      Perinuclear around all nuclei
    Cytoplasmic foci
stage 4-5 Stage 4-5
 Expressed
  Zygotic
  Ubiquitous
  Medium expression (21-40ms exp)
  Maternal
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear around all nuclei
    Exclusionary patterns
     Apical exclusion
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Pole cell nuclei
    All pole cell nuclei
  Ubiquitous
  Medium expression (21-40ms exp)
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around yolk nuclei
       Perinuclear around blastoderm nuclei
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Yolk nuclei
    All yolk nuclei
   Germ cell nuclei
    All pole cell nuclei
   Blastoderm nuclei
    All blastoderm nuclei
     Persistent widespread
  Ubiquitous
  Strong expression (1-20ms exp)
  Medium expression (21-40ms exp)
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Midgut
   Hindgut
  Ubiquitous
  Strong expression (1-20ms exp)
  Medium expression (21-40ms exp)
  Localized
   Subcellular localization patterns
    Nuclei-associated localization
     Nuclear in midgut nuclei
     Nuclear in hindgut nuclei
    Foci
     Small Foci
      Small Foci in midgut
      Small Foci in foregut
     Bigger Foci

Larva

Area Images Terms

Adult

Area Images Terms

Comments

-sample background seems to high and does not match current data - candidate for retest (2025)

Probe CR45138-RA Links: Permalink

Genes: CR45138

Embryo

Area Images Terms
stage 1-3 Stage 1-3
 Non-Expressed
stage 4-5 Stage 4-5
 Expressed
  Zygotic
   Zygotic starting stage 5
  Localized
   Subcellular localization patterns
    Yolk plasm localization
    Yolk cortex localization
    Exclusionary patterns
     Pole cell exclusion
    Cytoplasmic foci
stage 6-7 Stage 6-7
 Expressed
  Zygotic
   Yolk Nuclei
    All yolk nuclei
   Blastoderm nuclei
    Subset blastoderm nuclei
     Ventral blastoderm nuclei
  Localized
   Yolk plasm localization
    Yolk plasm enrichment
   Subcellular localization patterns
    Nuclei-associated localization
     Perinuclear localization
      Perinuclear subset of nuclei
       Perinuclear around yolk nuclei
    Cytoplasmic foci
stage 8-9 Stage 8-9
 Expressed
  Zygotic
   Yolk nuclei
    Subset yolk nuclei
   Blastoderm nuclei
    Subset blastoderm nuclei
     Expression in mesoderm
     Expression in ectoderm
     Expression in API
  Localized
   Subcellular localization patterns
    Cytoplasmic foci
    Basal localization
    Apical localization
   Embryonic localization patterns
    Ventral localization
    Anterior localization
 Degraded
  Degraded partially stage 8
stage 10-17 Stage 10-17
 Expressed
  Zygotic
   Yolk nuclei
   Muscles-embryo
   Midgut
    Midgut subset
   Head
  Localized

Larva

Area Images Terms

Adult

Area Images Terms

Comments

-performed via HCR-FISH using 3 probe sets targeting the RA isoform transcript
-seems to agree with modENCODE RNA-seq data
-interesting yolk and mesoderm patterns in trunk and head